TernausNetV2: Fully Convolutional Network for Instance Segmentation

The most common approaches to instance segmentation are complex and use two-stage networks with object proposals, conditional random-fields, template matching or recurrent neural networks. In this work we present TernausNetV2 - a simple fully convolutional network that allows extracting objects from a high-resolution satellite imagery on an instance level. The network has popular encoder-decoder type of architecture with skip connections but has a few essential modifications that allows using for semantic as well as for instance segmentation tasks. This approach is universal and allows to extend any network that has been successfully applied for semantic segmentation to perform instance segmentation task. In addition, we generalize network encoder that was pre-trained for RGB images to use additional input channels. It makes possible to use transfer learning from visual to a wider spectral range. For DeepGlobe-CVPR 2018 building detection sub-challenge, based on public leaderboard score, our approach shows superior performance in comparison to other methods. The source code corresponding pre-trained weights are publicly available at https://github.com/ternaus/TernausNetV

Object Detection in High Resolution Aerial Images and Hyperspectral Remote Sensing Images

With rapid developments in satellite and sensor technologies, there has been a dramatic increase in the availability of remotely sensed images. However, the exploration of these images still involves a tremendous amount of human interventions, which are tedious, time-consuming, and inefficient. To help imaging experts gain a complete understanding of the images and locate the objects of interest in a more accurate and efficient way, there is always an urgent need for developing automatic detection algorithms. In this work, we delve into the object detection problems in remote sensing applications, exploring the detection algorithms for both hyperspectral images (HSIs) and high resolution aerial images. In the first part, we focus on the subpixel target detection problem in HSIs with low spatial resolutions, where the objects of interest are much smaller than the image pixel spatial resolution. To this end, we explore the detection frameworks that integrate image segmentation techniques in designing the matched filters (MFs). In particular, we propose a novel image segmentation algorithm to identify the spatial-spectral coherent image regions, from which the background statistics were estimated for deriving the MFs. Extensive experimental studies were carried out to demonstrate the advantages of the proposed subpixel target detection framework. Our studies show the superiority of the approach when comparing to state-of-the-art methods. The second part of the thesis explores the object based image analysis (OBIA) framework for geospatial object detection in high resolution aerial images. Specifically, we generate a tree representation of the aerial images from the output of hierarchical image segmentation algorithms and reformulate the object detection problem into a tree matching task. We then proposed two tree-matching algorithms for the object detection framework. We demonstrate the efficiency and effectiveness of the proposed tree-matching based object detection framework. In the third part, we study object detection in high resolution aerial images from a machine learning perspective. We investigate both traditional machine learning based framework and end-to-end convolutional neural network (CNN) based approach for various object detection tasks. In the traditional detection framework, we propose to apply the Gaussian process classifier (GPC) to train an object detector and demonstrate the advantages of the probabilistic classification algorithm. In the CNN based approach, we proposed a novel scale transfer module that generates enhanced feature maps for object detection. Our results show the efficiency and competitiveness of the proposed algorithms when compared to state-of-the-art counterparts

Panoptic Segmentation

We propose and study a task we name panoptic segmentation (PS). Panoptic segmentation unifies the typically distinct tasks of semantic segmentation (assign a class label to each pixel) and instance segmentation (detect and segment each object instance). The proposed task requires generating a coherent scene segmentation that is rich and complete, an important step toward real-world vision systems. While early work in computer vision addressed related image/scene parsing tasks, these are not currently popular, possibly due to lack of appropriate metrics or associated recognition challenges. To address this, we propose a novel panoptic quality (PQ) metric that captures performance for all classes (stuff and things) in an interpretable and unified manner. Using the proposed metric, we perform a rigorous study of both human and machine performance for PS on three existing datasets, revealing interesting insights about the task. The aim of our work is to revive the interest of the community in a more unified view of image segmentation.Comment: accepted to CVPR 201

Cell Segmentation and Tracking using CNN-Based Distance Predictions and a Graph-Based Matching Strategy

The accurate segmentation and tracking of cells in microscopy image sequences is an important task in biomedical research, e.g., for studying the development of tissues, organs or entire organisms. However, the segmentation of touching cells in images with a low signal-to-noise-ratio is still a challenging problem. In this paper, we present a method for the segmentation of touching cells in microscopy images. By using a novel representation of cell borders, inspired by distance maps, our method is capable to utilize not only touching cells but also close cells in the training process. Furthermore, this representation is notably robust to annotation errors and shows promising results for the segmentation of microscopy images containing in the training data underrepresented or not included cell types. For the prediction of the proposed neighbor distances, an adapted U-Net convolutional neural network (CNN) with two decoder paths is used. In addition, we adapt a graph-based cell tracking algorithm to evaluate our proposed method on the task of cell tracking. The adapted tracking algorithm includes a movement estimation in the cost function to re-link tracks with missing segmentation masks over a short sequence of frames. Our combined tracking by detection method has proven its potential in the IEEE ISBI 2020 Cell Tracking Challenge (http://celltrackingchallenge.net/) where we achieved as team KIT-Sch-GE multiple top three rankings including two top performances using a single segmentation model for the diverse data sets.Comment: 25 pages, 14 figures, methods of the team KIT-Sch-GE for the IEEE ISBI 2020 Cell Tracking Challeng