Multiple instance learning for sequence data with across bag dependencies

In Multiple Instance Learning (MIL) problem for sequence data, the instances inside the bags are sequences. In some real world applications such as bioinformatics, comparing a random couple of sequences makes no sense. In fact, each instance may have structural and/or functional relations with instances of other bags. Thus, the classification task should take into account this across bag relation. In this work, we present two novel MIL approaches for sequence data classification named ABClass and ABSim. ABClass extracts motifs from related instances and use them to encode sequences. A discriminative classifier is then applied to compute a partial classification result for each set of related sequences. ABSim uses a similarity measure to discriminate the related instances and to compute a scores matrix. For both approaches, an aggregation method is applied in order to generate the final classification result. We applied both approaches to solve the problem of bacterial Ionizing Radiation Resistance prediction. The experimental results of the presented approaches are satisfactory

Algorithms for the Analysis of Spatio-Temporal Data from Team Sports

Modern object tracking systems are able to simultaneously record trajectories—sequences of time-stamped location points—for large numbers of objects with high frequency and accuracy. The availability of trajectory datasets has resulted in a consequent demand for algorithms and tools to extract information from these data. In this thesis, we present several contributions intended to do this, and in particular, to extract information from trajectories tracking football (soccer) players during matches. Football player trajectories have particular properties that both facilitate and present challenges for the algorithmic approaches to information extraction. The key property that we look to exploit is that the movement of the players reveals information about their objectives through cooperative and adversarial coordinated behaviour, and this, in turn, reveals the tactics and strategies employed to achieve the objectives. While the approaches presented here naturally deal with the application-specific properties of football player trajectories, they also apply to other domains where objects are tracked, for example behavioural ecology, traffic and urban planning

Sequential pattern mining with uncertain data

In recent years, a number of emerging applications, such as sensor monitoring systems, RFID networks and location based services, have led to the proliferation of uncertain data. However, traditional data mining algorithms are usually inapplicable in uncertain data because of its probabilistic nature. Uncertainty has to be carefully handled; otherwise, it might significantly downgrade the quality of underlying data mining applications. Therefore, we extend traditional data mining algorithms into their uncertain versions so that they still can produce accurate results. In particular, we use a motivating example of sequential pattern mining to illustrate how to incorporate uncertain information in the process of data mining. We use possible world semantics to interpret two typical types of uncertainty: the tuple-level existential uncertainty and the attribute-level temporal uncertainty. In an uncertain database, it is probabilistic that a pattern is frequent or not; thus, we define the concept of probabilistic frequent sequential patterns. And various algorithms are designed to mine probabilistic frequent patterns efficiently in uncertain databases. We also implement our algorithms on distributed computing platforms, such as MapReduce and Spark, so that they can be applied in large scale databases. Our work also includes uncertainty computation in supervised machine learning algorithms. We develop an artificial neural network to classify numeric uncertain data; and a Naive Bayesian classifier is designed for classifying categorical uncertain data streams. We also propose a discretization algorithm to pre-process numerical uncertain data, since many classifiers work with categoric data only. And experimental results in both synthetic and real-world uncertain datasets demonstrate that our methods are effective and efficient

Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns

© 2016 Background and objective Critical care patient events like sepsis or septic shock in intensive care units (ICUs) are dangerous complications which can cause multiple organ failures and eventual death. Preventive prediction of such events will allow clinicians to stage effective interventions for averting these critical complications. Methods It is widely understood that physiological conditions of patients on variables such as blood pressure and heart rate are suggestive to gradual changes over a certain period of time, prior to the occurrence of a septic shock. This work investigates the performance of a novel machine learning approach for the early prediction of septic shock. The approach combines highly informative sequential patterns extracted from multiple physiological variables and captures the interactions among these patterns via coupled hidden Markov models (CHMM). In particular, the patterns are extracted from three non-invasive waveform measurements: the mean arterial pressure levels, the heart rates and respiratory rates of septic shock patients from a large clinical ICU dataset called MIMIC-II. Evaluation and results For baseline estimations, SVM and HMM models on the continuous time series data for the given patients, using MAP (mean arterial pressure), HR (heart rate), and RR (respiratory rate) are employed. Single channel patterns based HMM (SCP-HMM) and multi-channel patterns based coupled HMM (MCP-HMM) are compared against baseline models using 5-fold cross validation accuracies over multiple rounds. Particularly, the results of MCP-HMM are statistically significant having a p-value of 0.0014, in comparison to baseline models. Our experiments demonstrate a strong competitive accuracy in the prediction of septic shock, especially when the interactions between the multiple variables are coupled by the learning model. Conclusions It can be concluded that the novelty of the approach, stems from the integration of sequence-based physiological pattern markers with the sequential CHMM model to learn dynamic physiological behavior, as well as from the coupling of such patterns to build powerful risk stratification models for septic shock patients

Learning Spectral-Spatial-Temporal Features via a Recurrent Convolutional Neural Network for Change Detection in Multispectral Imagery

Change detection is one of the central problems in earth observation and was extensively investigated over recent decades. In this paper, we propose a novel recurrent convolutional neural network (ReCNN) architecture, which is trained to learn a joint spectral-spatial-temporal feature representation in a unified framework for change detection in multispectral images. To this end, we bring together a convolutional neural network (CNN) and a recurrent neural network (RNN) into one end-to-end network. The former is able to generate rich spectral-spatial feature representations, while the latter effectively analyzes temporal dependency in bi-temporal images. In comparison with previous approaches to change detection, the proposed network architecture possesses three distinctive properties: 1) It is end-to-end trainable, in contrast to most existing methods whose components are separately trained or computed; 2) it naturally harnesses spatial information that has been proven to be beneficial to change detection task; 3) it is capable of adaptively learning the temporal dependency between multitemporal images, unlike most of algorithms that use fairly simple operation like image differencing or stacking. As far as we know, this is the first time that a recurrent convolutional network architecture has been proposed for multitemporal remote sensing image analysis. The proposed network is validated on real multispectral data sets. Both visual and quantitative analysis of experimental results demonstrates competitive performance in the proposed mode

Social Fingerprinting: detection of spambot groups through DNA-inspired behavioral modeling

Spambot detection in online social networks is a long-lasting challenge involving the study and design of detection techniques capable of efficiently identifying ever-evolving spammers. Recently, a new wave of social spambots has emerged, with advanced human-like characteristics that allow them to go undetected even by current state-of-the-art algorithms. In this paper, we show that efficient spambots detection can be achieved via an in-depth analysis of their collective behaviors exploiting the digital DNA technique for modeling the behaviors of social network users. Inspired by its biological counterpart, in the digital DNA representation the behavioral lifetime of a digital account is encoded in a sequence of characters. Then, we define a similarity measure for such digital DNA sequences. We build upon digital DNA and the similarity between groups of users to characterize both genuine accounts and spambots. Leveraging such characterization, we design the Social Fingerprinting technique, which is able to discriminate among spambots and genuine accounts in both a supervised and an unsupervised fashion. We finally evaluate the effectiveness of Social Fingerprinting and we compare it with three state-of-the-art detection algorithms. Among the peculiarities of our approach is the possibility to apply off-the-shelf DNA analysis techniques to study online users behaviors and to efficiently rely on a limited number of lightweight account characteristics