234,182 research outputs found

    Robust Machine Learning-Based Correction on Automatic Segmentation of the Cerebellum and Brainstem.

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    Automated segmentation is a useful method for studying large brain structures such as the cerebellum and brainstem. However, automated segmentation may lead to inaccuracy and/or undesirable boundary. The goal of the present study was to investigate whether SegAdapter, a machine learning-based method, is useful for automatically correcting large segmentation errors and disagreement in anatomical definition. We further assessed the robustness of the method in handling size of training set, differences in head coil usage, and amount of brain atrophy. High resolution T1-weighted images were acquired from 30 healthy controls scanned with either an 8-channel or 32-channel head coil. Ten patients, who suffered from brain atrophy because of fragile X-associated tremor/ataxia syndrome, were scanned using the 32-channel head coil. The initial segmentations of the cerebellum and brainstem were generated automatically using Freesurfer. Subsequently, Freesurfer's segmentations were both manually corrected to serve as the gold standard and automatically corrected by SegAdapter. Using only 5 scans in the training set, spatial overlap with manual segmentation in Dice coefficient improved significantly from 0.956 (for Freesurfer segmentation) to 0.978 (for SegAdapter-corrected segmentation) for the cerebellum and from 0.821 to 0.954 for the brainstem. Reducing the training set size to 2 scans only decreased the Dice coefficient ≤0.002 for the cerebellum and ≤ 0.005 for the brainstem compared to the use of training set size of 5 scans in corrective learning. The method was also robust in handling differences between the training set and the test set in head coil usage and the amount of brain atrophy, which reduced spatial overlap only by <0.01. These results suggest that the combination of automated segmentation and corrective learning provides a valuable method for accurate and efficient segmentation of the cerebellum and brainstem, particularly in large-scale neuroimaging studies, and potentially for segmenting other neural regions as well

    Hierarchical object detection with deep reinforcement learning

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    We present a method for performing hierarchical object detection in images guided by a deep reinforcement learning agent. The key idea is to focus on those parts of the image that contain richer information and zoom on them. We train an intelligent agent that, given an image window, is capable of deciding where to focus the attention among five different predefined region candidates (smaller windows). This procedure is iterated providing a hierarchical image analysis. We compare two different candidate proposal strategies to guide the object search: with and without overlap. Moreover, our work compares two different strategies to extract features from a convolutional neural network for each region proposal: a first one that computes new feature maps for each region proposal, and a second one that computes the feature maps for the whole image to later generate crops for each region proposal. Experiments indicate better results for the overlapping candidate proposal strategy and a loss of performance for the cropped image features due to the loss of spatial resolution. We argue that, while this loss seems unavoidable when working with large amounts of object candidates, the much more reduced amount of region proposals generated by our reinforcement learning agent allows considering to extract features for each location without sharing convolutional computation among regions.Postprint (published version

    Unified Data Management and Comprehensive Performance Evaluation for Urban Spatial-Temporal Prediction [Experiment, Analysis & Benchmark]

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    The field of urban spatial-temporal prediction is advancing rapidly with the development of deep learning techniques and the availability of large-scale datasets. However, challenges persist in accessing and utilizing diverse urban spatial-temporal datasets from different sources and stored in different formats, as well as determining effective model structures and components with the proliferation of deep learning models. This work addresses these challenges and provides three significant contributions. Firstly, we introduce "atomic files", a unified storage format designed for urban spatial-temporal big data, and validate its effectiveness on 40 diverse datasets, simplifying data management. Secondly, we present a comprehensive overview of technological advances in urban spatial-temporal prediction models, guiding the development of robust models. Thirdly, we conduct extensive experiments using diverse models and datasets, establishing a performance leaderboard and identifying promising research directions. Overall, this work effectively manages urban spatial-temporal data, guides future efforts, and facilitates the development of accurate and efficient urban spatial-temporal prediction models. It can potentially make long-term contributions to urban spatial-temporal data management and prediction, ultimately leading to improved urban living standards.Comment: 14 pages, 3 figures. arXiv admin note: text overlap with arXiv:2304.1434
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