Learning from medical data streams: an introduction

Clinical practice and research are facing a new challenge created by the rapid growth of health information science and technology, and the complexity and volume of biomedical data. Machine learning from medical data streams is a recent area of research that aims to provide better knowledge extraction and evidence-based clinical decision support in scenarios where data are produced as a continuous flow. This year's edition of AIME, the Conference on Artificial Intelligence in Medicine, enabled the sound discussion of this area of research, mainly by the inclusion of a dedicated workshop. This paper is an introduction to LEMEDS, the Learning from Medical Data Streams workshop, which highlights the contributed papers, the invited talk and expert panel discussion, as well as related papers accepted to the main conference

Learning Deep Belief Networks from Non-Stationary Streams

Deep learning has proven to be beneficial for complex tasks such as classifying images. However, this approach has been mostly applied to static datasets. The analysis of non-stationary (e.g., concept drift) streams of data involves specific issues connected with the temporal and changing nature of the data. In this paper, we propose a proof-of-concept method, called Adaptive Deep Belief Networks, of how deep learning can be generalized to learn online from changing streams of data. We do so by exploiting the generative properties of the model to incrementally re-train the Deep Belief Network whenever new data are collected. This approach eliminates the need to store past observations and, therefore, requires only constant memory consumption. Hence, our approach can be valuable for life-long learning from non-stationary data streams. © 2012 Springer-Verlag

Dynamic learning of cases from data streams

This paper presents a dynamic adaptive framework for building a case library being able to cope with a data stream in the field of Case-Based Reasoning. The framework provides a three-layer architecture formed by a set of case libraries dynamically built. This Dynamic and Adaptive Case Library (DACL), can process in an incremental way a data stream, and can be used as a classification model or a regression model, depending on the predicted variable. In this paper, the work is focused on classification tasks. Each case library has a first layer formed by the dynamic clusters of cases, a second one formed by the meta-cases or prototypes of the cluster, and a third one formed by an incremental indexing structure. In our approach, some variant of k-d tres have been used, in addition to an exploration technique to get a more efficient retrieval time. This three-layer famework can be constructed in an incremental way. Several meta-case learning approaches are proposed, as well as some case learning strategies. The framework has been tested with several datasets. The experimental results show a very good performance in comparison with a batch learning scheme over the same data.Peer ReviewedPostprint (author's final draft

Learning from Data Streams with Randomized Forests

Non-stationary streaming data poses a familiar challenge in machine learning: the need to obtain fast and accurate predictions. A data stream is a continuously generated sequence of data, with data typically arriving rapidly. They are often characterised by a non-stationary generative process, with concept drift occurring as the process changes. Such processes are commonly seen in the real world, such as in advertising, shopping trends, environmental conditions, electricity monitoring and traffic monitoring. Typical stationary algorithms are ill-suited for use with concept drifting data, thus necessitating more targeted methods. Tree-based methods are a popular approach to this problem, traditionally focussing on the use of the Hoeffding bound in order to guarantee performance relative to a stationary scenario. However, there are limited single learners available for regression scenarios, and those that do exist often struggle to choose between similarly discriminative splits, leading to longer training times and worse performance. This limited pool of single learners in turn hampers the performance of ensemble approaches in which they act as base learners. In this thesis we seek to remedy this gap in the literature, developing methods which focus on increasing randomization to both improve predictive performance and reduce the training times of tree-based ensemble methods. In particular, we have chosen to investigate the use of randomization as it is known to be able to improve generalization error in ensembles, and is also expected to lead to fast training times, thus being a natural method of handling the problems typically experienced by single learners. We begin in a regression scenario, introducing the Adaptive Trees for Streaming with Extreme Randomization (ATSER) algorithm; a partially randomized approach based on the concept of Extremely Randomized (extra) trees. The ATSER algorithm incrementally trains trees, using the Hoeffding bound to select the best of a random selection of splits. Simultaneously, the trees also detect and adapt to changes in the data stream. Unlike many traditional streaming algorithms ATSER trees can easily be extended to include nominal features. We find that compared to other contemporary methods ensembles of ATSER trees lead to improved predictive performance whilst also reducing run times. We then demonstrate the Adaptive Categorisation Trees for Streaming with Extreme Randomization (ACTSER) algorithm, an adaption of the ATSER algorithm to the more traditional categorization scenario, again showing improved predictive performance and reduced runtimes. The inclusion of nominal features is particularly novel in this setting since typical categorization approaches struggle to handle them. Finally we examine a completely randomized scenario, where an ensemble of trees is generated prior to having access to the data stream, while also considering multivariate splits in addition to the traditional axis-aligned approach. We find that through the combination of a forgetting mechanism in linear models and dynamic weighting for ensemble members, we are able to avoid explicitly testing for concept drift. This leads to fast ensembles with strong predictive performance, whilst also requiring fewer parameters than other contemporary methods. For each of the proposed methods in this thesis, we demonstrate empirically that they are effective over a variety of different non-stationary data streams, including on multiple types of concept drift. Furthermore, in comparison to other contemporary data streaming algorithms, we find the biggest improvements in performance are on noisy data streams.Engineers Gat

Learning from Data Streams: An Overview and Update

The literature on machine learning in the context of data streams is vast and growing. However, many of the defining assumptions regarding data-stream learning tasks are too strong to hold in practice, or are even contradictory such that they cannot be met in the contexts of supervised learning. Algorithms are chosen and designed based on criteria which are often not clearly stated, for problem settings not clearly defined, tested in unrealistic settings, and/or in isolation from related approaches in the wider literature. This puts into question the potential for real-world impact of many approaches conceived in such contexts, and risks propagating a misguided research focus. We propose to tackle these issues by reformulating the fundamental definitions and settings of supervised data-stream learning with regard to contemporary considerations of concept drift and temporal dependence; and we take a fresh look at what constitutes a supervised data-stream learning task, and a reconsideration of algorithms that may be applied to tackle such tasks. Through and in reflection of this formulation and overview, helped by an informal survey of industrial players dealing with real-world data streams, we provide recommendations. Our main emphasis is that learning from data streams does not impose a single-pass or online-learning approach, or any particular learning regime; and any constraints on memory and time are not specific to streaming. Meanwhile, there exist established techniques for dealing with temporal dependence and concept drift, in other areas of the literature. For the data streams community, we thus encourage a shift in research focus, from dealing with often-artificial constraints and assumptions on the learning mode, to issues such as robustness, privacy, and interpretability which are increasingly relevant to learning in data streams in academic and industrial settings

A review on data stream classification

At this present time, the significance of data streams cannot be denied as many researchers have placed their focus on the research areas of databases, statistics, and computer science. In fact, data streams refer to some data points sequences that are found in order with the potential to be non-binding, which is generated from the process of generating information in a manner that is not stationary. As such the typical tasks of searching data have been linked to streams of data that are inclusive of clustering, classification, and repeated mining of pattern. This paper presents several data stream clustering approaches, which are based on density, besides attempting to comprehend the function of the related algorithms; both semi-supervised and active learning, along with reviews of a number of recent studies

Evolving Ensemble Fuzzy Classifier

The concept of ensemble learning offers a promising avenue in learning from data streams under complex environments because it addresses the bias and variance dilemma better than its single model counterpart and features a reconfigurable structure, which is well suited to the given context. While various extensions of ensemble learning for mining non-stationary data streams can be found in the literature, most of them are crafted under a static base classifier and revisits preceding samples in the sliding window for a retraining step. This feature causes computationally prohibitive complexity and is not flexible enough to cope with rapidly changing environments. Their complexities are often demanding because it involves a large collection of offline classifiers due to the absence of structural complexities reduction mechanisms and lack of an online feature selection mechanism. A novel evolving ensemble classifier, namely Parsimonious Ensemble pENsemble, is proposed in this paper. pENsemble differs from existing architectures in the fact that it is built upon an evolving classifier from data streams, termed Parsimonious Classifier pClass. pENsemble is equipped by an ensemble pruning mechanism, which estimates a localized generalization error of a base classifier. A dynamic online feature selection scenario is integrated into the pENsemble. This method allows for dynamic selection and deselection of input features on the fly. pENsemble adopts a dynamic ensemble structure to output a final classification decision where it features a novel drift detection scenario to grow the ensemble structure. The efficacy of the pENsemble has been numerically demonstrated through rigorous numerical studies with dynamic and evolving data streams where it delivers the most encouraging performance in attaining a tradeoff between accuracy and complexity.Comment: this paper has been published by IEEE Transactions on Fuzzy System