Large-scale predictive modeling and analytics through regression queries in data management systems

Regression analytics has been the standard approach to modeling the relationship between input and output variables, while recent trends aim to incorporate advanced regression analytics capabilities within data management systems (DMS). Linear regression queries are fundamental to exploratory analytics and predictive modeling. However, computing their exact answers leaves a lot to be desired in terms of efficiency and scalability. We contribute with a novel predictive analytics model and an associated statistical learning methodology, which are efficient, scalable and accurate in discovering piecewise linear dependencies among variables by observing only regression queries and their answers issued to a DMS. We focus on in-DMS piecewise linear regression and specifically in predicting the answers to mean-value aggregate queries, identifying and delivering the piecewise linear dependencies between variables to regression queries and predicting the data dependent variables within specific data subspaces defined by analysts and data scientists. Our goal is to discover a piecewise linear data function approximation over the underlying data only through query–answer pairs that is competitive with the best piecewise linear approximation to the ground truth. Our methodology is analyzed, evaluated and compared with exact solution and near-perfect approximations of the underlying relationships among variables achieving orders of magnitude improvement in analytics processing

Scalable aggregation predictive analytics: a query-driven machine learning approach

We introduce a predictive modeling solution that provides high quality predictive analytics over aggregation queries in Big Data environments. Our predictive methodology is generally applicable in environments in which large-scale data owners may or may not restrict access to their data and allow only aggregation operators like COUNT to be executed over their data. In this context, our methodology is based on historical queries and their answers to accurately predict ad-hoc queries’ answers. We focus on the widely used set-cardinality, i.e., COUNT, aggregation query, as COUNT is a fundamental operator for both internal data system optimizations and for aggregation-oriented data exploration and predictive analytics. We contribute a novel, query-driven Machine Learning (ML) model whose goals are to: (i) learn the query-answer space from past issued queries, (ii) associate the query space with local linear regression & associative function estimators, (iii) define query similarity, and (iv) predict the cardinality of the answer set of unseen incoming queries, referred to the Set Cardinality Prediction (SCP) problem. Our ML model incorporates incremental ML algorithms for ensuring high quality prediction results. The significance of contribution lies in that it (i) is the only query-driven solution applicable over general Big Data environments, which include restricted-access data, (ii) offers incremental learning adjusted for arriving ad-hoc queries, which is well suited for query-driven data exploration, and (iii) offers a performance (in terms of scalability, SCP accuracy, processing time, and memory requirements) that is superior to data-centric approaches. We provide a comprehensive performance evaluation of our model evaluating its sensitivity, scalability and efficiency for quality predictive analytics. In addition, we report on the development and incorporation of our ML model in Spark showing its superior performance compared to the Spark’s COUNT method

Query-driven learning for predictive analytics of data subspace cardinality

Fundamental to many predictive analytics tasks is the ability to estimate the cardinality (number of data items) of multi-dimensional data subspaces, defined by query selections over datasets. This is crucial for data analysts dealing with, e.g., interactive data subspace explorations, data subspace visualizations, and in query processing optimization. However, in many modern data systems, predictive analytics may be (i) too costly money-wise, e.g., in clouds, (ii) unreliable, e.g., in modern Big Data query engines, where accurate statistics are difficult to obtain/maintain, or (iii) infeasible, e.g., for privacy issues. We contribute a novel, query-driven, function estimation model of analyst-defined data subspace cardinality. The proposed estimation model is highly accurate in terms of prediction and accommodating the well-known selection queries: multi-dimensional range and distance-nearest neighbors (radius) queries. Our function estimation model: (i) quantizes the vectorial query space, by learning the analysts’ access patterns over a data space, (ii) associates query vectors with their corresponding cardinalities of the analyst-defined data subspaces, (iii) abstracts and employs query vectorial similarity to predict the cardinality of an unseen/unexplored data subspace, and (iv) identifies and adapts to possible changes of the query subspaces based on the theory of optimal stopping. The proposed model is decentralized, facilitating the scaling-out of such predictive analytics queries. The research significance of the model lies in that (i) it is an attractive solution when data-driven statistical techniques are undesirable or infeasible, (ii) it offers a scale-out, decentralized training solution, (iii) it is applicable to different selection query types, and (iv) it offers a performance that is superior to that of data-driven approaches

BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments

Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require high-performance computing (HPC) techniques and can benefit from specialized technologies such as Scientific Workflow Management Systems (SWfMS) and databases. In this work, we present BioWorkbench, a framework for managing and analyzing bioinformatics experiments. This framework automatically collects provenance data, including both performance data from workflow execution and data from the scientific domain of the workflow application. Provenance data can be analyzed through a web application that abstracts a set of queries to the provenance database, simplifying access to provenance information. We evaluate BioWorkbench using three case studies: SwiftPhylo, a phylogenetic tree assembly workflow; SwiftGECKO, a comparative genomics workflow; and RASflow, a RASopathy analysis workflow. We analyze each workflow from both computational and scientific domain perspectives, by using queries to a provenance and annotation database. Some of these queries are available as a pre-built feature of the BioWorkbench web application. Through the provenance data, we show that the framework is scalable and achieves high-performance, reducing up to 98% of the case studies execution time. We also show how the application of machine learning techniques can enrich the analysis process

Database integrated analytics using R : initial experiences with SQL-Server + R

© 2016 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.Most data scientists use nowadays functional or semi-functional languages like SQL, Scala or R to treat data, obtained directly from databases. Such process requires to fetch data, process it, then store again, and such process tends to be done outside the DB, in often complex data-flows. Recently, database service providers have decided to integrate “R-as-a-Service” in their DB solutions. The analytics engine is called directly from the SQL query tree, and results are returned as part of the same query. Here we show a first taste of such technology by testing the portability of our ALOJA-ML analytics framework, coded in R, to Microsoft SQL-Server 2016, one of the SQL+R solutions released recently. In this work we discuss some data-flow schemes for porting a local DB + analytics engine architecture towards Big Data, focusing specially on the new DB Integrated Analytics approach, and commenting the first experiences in usability and performance obtained from such new services and capabilities.Peer ReviewedPostprint (author's final draft