Mapping Crop Cycles in China Using MODIS-EVI Time Series

As the Earth’s population continues to grow and demand for food increases, the need for improved and timely information related to the properties and dynamics of global agricultural systems is becoming increasingly important. Global land cover maps derived from satellite data provide indispensable information regarding the geographic distribution and areal extent of global croplands. However, land use information, such as cropping intensity (defined here as the number of cropping cycles per year), is not routinely available over large areas because mapping this information from remote sensing is challenging. In this study, we present a simple but efficient algorithm for automated mapping of cropping intensity based on data from NASA’s (NASA: The National Aeronautics and Space Administration) MODerate Resolution Imaging Spectroradiometer (MODIS). The proposed algorithm first applies an adaptive Savitzky-Golay filter to smooth Enhanced Vegetation Index (EVI) time series derived from MODIS surface reflectance data. It then uses an iterative moving-window methodology to identify cropping cycles from the smoothed EVI time series. Comparison of results from our algorithm with national survey data at both the provincial and prefectural level in China show that the algorithm provides estimates of gross sown area that agree well with inventory data. Accuracy assessment comparing visually interpreted time series with algorithm results for a random sample of agricultural areas in China indicates an overall accuracy of 91.0% for three classes defined based on the number of cycles observed in EVI time series. The algorithm therefore appears to provide a straightforward and efficient method for mapping cropping intensity from MODIS time series data

Fernerkundung der Vegetationsphänologie über MODIS NDVI Daten - Herausforderungen bei der Datenverarbeitung und -validierung mittels Bodenbeobachtungen zahlreicher Arten und LiDAR

Phenology, the cyclic events in living organisms is triggered by climatic conditions and indicators of climate change. They are important factors influencing species interactions and ecosystem functioning. This thesis deals with the estimation of phenological metrics (Land Surface Phenology or LSP) from MODIS based time series NDVI data. Results of data analysis emphasises the role of ground observations, topography and LiDAR characteristics of forest stand in describing the variability in LSP.Phänologie, die zyklischen Stadien von lebenden Organismen werden über klimatische Verhältnisse gesteuert und dienen als Indikatoren des Klimawandels. Diese Faktoren beeinflussen maßgeblich die Interaktionen zwischen Arten und sind für das Funktionieren von Ökosystemen ausschlaggebend. Diese Arbeit behandelt die Bestimmung von phänologischen Metriken (Phänologie der Landoberfläche oder LSP) unter Verwendung von MODIS basierten NDVI Zeitreihen. Die Ergebnisse der Datenanalyse hebt die Wichtigkeit von Bodenbeobachtungen, Topographie und LiDAR Merkmalen von Waldbeständen bei der Beschreibung der LSP Variabilität hervor

Changes in Snow Phenology from 1979 to 2016 over the Tianshan Mountains, Central Asia

Snowmelt from the Tianshan Mountains (TS) is a major contributor to the water resources of the Central Asian region. Thus, changes in snow phenology over the TS have significant implications for regional water supplies and ecosystem services. However, the characteristics of changes in snow phenology and their influences on the climate are poorly understood throughout the entire TS due to the lack of in situ observations, limitations of optical remote sensing due to clouds, and decentralized political landscapes. Using passive microwave remote sensing snow data from 1979 to 2016 across the TS, this study investigates the spatiotemporal variations of snow phenology and their attributes and implications. The results show that the mean snow onset day (Do), snow end day (De), snow cover duration days (Dd), and maximum snow depth (SDmax) from 1979 to 2016 were the 78.2nd day of hydrological year (DOY), 222.4th DOY, 146.2 days, and 16.1 cm over the TS, respectively. Dd exhibited a spatial distribution of days with a temperature of \u3c0 \u3e°C derived from meteorological station observations. Anomalies of snow phenology displayed the regional diversities over the TS, with shortened Dd in high-altitude regions and the Fergana Valley but increased Dd in the Ili Valley and upper reaches of the Chu and Aksu Rivers. Increased SDmax was exhibited in the central part of the TS, and decreased SDmax was observed in the western and eastern parts of the TS. Changes in Dd were dominated by earlier De, which was caused by increased melt-season temperatures (Tm). Earlier De with increased accumulation of seasonal precipitation (Pa) influenced the hydrological processes in the snowmelt recharge basin, increasing runoff and earlier peak runoff in the spring, which intensified the regional water crisi

MODISTools - downloading and processing MODIS remotely sensed data in R

Remotely sensed data – available at medium to high resolution across global spatial and temporal scales – are a valuable resource for ecologists. In particular, products from NASA's MODerate-resolution Imaging Spectroradiometer (MODIS), providing twice-daily global coverage, have been widely used for ecological applications. We present MODISTools, an R package designed to improve the accessing, downloading, and processing of remotely sensed MODIS data. MODISTools automates the process of data downloading and processing from any number of locations, time periods, and MODIS products. This automation reduces the risk of human error, and the researcher effort required compared to manual per-location downloads. The package will be particularly useful for ecological studies that include multiple sites, such as meta-analyses, observation networks, and globally distributed experiments. We give examples of the simple, reproducible workflow that MODISTools provides and of the checks that are carried out in the process. The end product is in a format that is amenable to statistical modeling. We analyzed the relationship between species richness across multiple higher taxa observed at 526 sites in temperate forests and vegetation indices, measures of aboveground net primary productivity. We downloaded MODIS derived vegetation index time series for each location where the species richness had been sampled, and summarized the data into three measures: maximum time-series value, temporal mean, and temporal variability. On average, species richness covaried positively with our vegetation index measures. Different higher taxa show different positive relationships with vegetation indices. Models had high R2 values, suggesting higher taxon identity and a gradient of vegetation index together explain most of the variation in species richness in our data. MODISTools can be used on Windows, Mac, and Linux platforms, and is available from CRAN and GitHub (https://github.com/seantuck12/MODISTools)

Modelling, Monitoring and Validation of Plant Phenology Products

Phänologie, die Lehre der periodisch wiederkehrenden Entwicklungserscheinungen in der Natur, hat sich in den letzten Jahrzehnten zu einem wichtigen Teilgebiet der Klimaforschung entwickelt. Einer der Haupteffekte der globalen Erwärmung ist die Veränderung der Wachstumsmuster und Fortpflanzungsgewohnheiten von Pflanzen, und somit veränderte Phänologie. Um die Auswirkungen der Klimaveränderung auf wildwachsende sowie Kulturpflanzen vorherzusagen, werden phänologische Modelle angewendet, verbessert und validiert. Dabei ist Wissen über den aktuellen Stand der Vegetation notwendig, welches aus Beobachtungen und fernerkundliche Messungen gewonnen wird. Die hier präsentierte Arbeit befasst sich mit dem Verständnis der Zusammenhänge zwischen fernerkundlichen Messungen und phänologischen Stadien und somit den Herausforderungen der modernen phänologischen Forschung: Der Vorhersage der Phänologie durch Modellierungsansätze, der Beobachtung der Phänologie mit optischen boden- und satellitengestützten Sensoren und der Validierung phänologischer Produkte.Phenology, the study of recurring life cycle events of plants and animals has emerged as an important part of climate change research within the last decades. One of the main effects of global warming on vegetation is altered phenology, since plants have to modify their growth patterns and reproduction habits as reaction to changing environmental conditions. Forecasting phenology, thus phenological modelling, is a timely challenge given the necessity to predict the impact of global warming on wild-growing species and agricultural crops. However, assessing the present state of vegetation, thus phenological monitoring, is essential to update and validate model results. An improved comprehension of the relationships between plant phenology and remotely sensed products is crucial to interpret these results. Consequently, the presented thesis deals with the main challenges faced in modern phenology research, covering phenological forecasting with a modelling approach, satellite-based phenology extraction, and near-surface long-term monitoring of phenology

Empirical Approach for Modelling Tree Phenology in Mixed Forests Using Remote Sensing

Phenological events are good indicators of the effects of climate change, since phenological phases are sensitive to changes in environmental conditions. Although several national phenological networks monitor the phenology of different plant species, direct observations can only be conducted on individual trees, which cannot be easily extended over large and continuous areas. Remote sensing has often been applied to model phenology for large areas, focusing mostly on pure forests in which it is relatively easier to match vegetation indices with ground observations. In mixed forests, phenology modelling from remote sensing is often limited to land surface phenology, which consists of an overall phenology of all tree species present in a pixel. The potential of remote sensing for modelling the phenology of individual tree species in mixed forests remains underexplored. In this study, we applied the seasonal midpoint (SM) method with MODIS GPP to model the start of season (SOS) and the end of season (EOS) of six different tree species in Slovenian mixed forests. First, substitute locations were identified for each combination of observation station and plant species based on similar environmental conditions (aspect, slope, and altitude) and tree species of interest, and used to retrieve the remote sensing information used in the SM method after fitting the best of a Gaussian and two double logistic functions to each year of GPP time series. Then, the best thresholds were identified for SOS and EOS, and the results were validated using cross-validation. The results show clearly that the usual threshold of 0.5 is not best in most cases, especially for estimating the EOS. Despite the difficulty in modelling the phenology of different tree species in a mixed forest using remote sensing, it was possible to estimate SOS and EOS with moderate errors as low as <8 days (Fagus sylvatica and Tilia sp.) and <10 days (Fagus sylvatica and Populus tremula), respectively

Generalization and evaluation of the process-based forest ecosystem model PnET-CN for other biomes

Terrestrial ecosystems play an important role in carbon, water, and nitrogen cycling. Process-based ecosystem models, including PnET-CN, have been widely used to simulate ecosystem processes during the last two decades. PnET-CN is a forest ecosystem model, originally designed to predict ecosystem carbon, water, and nitrogen dynamics of temperate forests under a variety of circumstances. Among terrestrial ecosystem models, PnET-CN offers unique benefits, including simplicity and transparency of its structure, reliance on data-driven parameterization rather than calibration, and use of generalizeable relationships that provide explicit linkages among carbon, water and nitrogen cycles. The objective of our study was to apply PnET-CN to non-forest biomes: grasslands, shrublands, and savannas. We determined parameter values for grasslands and shrublands using the literature and ecophysiological databases. To assess the usefulness of PnET-CN in these ecosystems, we simulated carbon and water fluxes for six AmeriFlux sites: two grassland sites (Konza Prairie and Fermi Prairie), two open shrubland sites (Heritage Land Conservancy Pinyon Juniper Woodland and Sevilleta Desert Shrubland), and two woody savanna sites (Freeman Ranch and Tonzi Ranch). Grasslands and shrublands were simulated using the biome-specific parameters, and savannas were simulated as mixtures of grasslands and forests. For each site, we used flux observations to evaluate modeled carbon and water fluxes: gross primary productivity (GPP), ecosystem respiration (ER), net ecosystem productivity (NEP), evapotranspiration (ET), and water yield. We also evaluated simulated water use efficiency (WUE). PnET-CN generally captured the magnitude, seasonality, and interannual variability of carbon and water fluxes as well as WUE for grasslands, shrublands, and savannas. Overall, our results show that PnET-CN is a promising tool for modeling ecosystem carbon and water fluxes for non-forest biomes (grasslands, shrublands, and savannas), and especially for modeling GPP in mature biomes. Limitations in model performance included an overestimation of seasonal variability in GPP and ET for the two shrubland sites and overestimation of early season ER for the two shrubland sites and Freeman Ranch. Future modifications of PnET-CN for non-forest biomes should focus on belowground processes, including water storage in dry shrubland soils, root growth and respiration in grasslands, and soil carbon fluxes for all biomes

Mangrove phenology and environmental drivers derived from remote sensing in Southern Thailand

© 2019 by the authors. Vegetation phenology is the annual cycle timing of vegetation growth. Mangrove phenology is a vital component to assess mangrove viability and includes start of season (SOS), end of season (EOS), peak of season (POS), and length of season (LOS). Potential environmental drivers include air temperature (Ta), surface temperature (Ts), sea surface temperature (SST), rainfall, sea surface salinity (SSS), and radiation flux (Ra). The Enhanced vegetation index (EVI) was calculated from Moderate Resolution Imaging Spectroradiometer (MODIS, MOD13Q1) data over five study sites between 2003 and 2012. Four of the mangrove study sites were located on the Malay Peninsula on the Andaman Sea and one site located on the Gulf of Thailand. The goals of this study were to characterize phenology patterns across equatorial Thailand Indo-Malay mangrove forests, identify climatic and aquatic drivers of mangrove seasonality, and compare mangrove phenologies with surrounding upland tropical forests. Our results show the seasonality of mangrove growth was distinctly different from the surrounding land-based tropical forests. The mangrove growth season was approximately 8-9 months duration, starting in April to June, peaking in August to October and ending in January to February of the following year. The 10-year trend analysis revealed significant delaying trends in SOS, POS, and EOS for the Andaman Sea sites but only for EOS at the Gulf of Thailand site. The cumulative rainfall is likely to be the main factor driving later mangrove phenologies