Kernel Methods for Tree Structured Data

Machine learning comprises a series of techniques for automatic extraction of meaningful information from large collections of noisy data. In many real world applications, data is naturally represented in structured form. Since traditional methods in machine learning deal with vectorial information, they require an a priori form of preprocessing. Among all the learning techniques for dealing with structured data, kernel methods are recognized to have a strong theoretical background and to be effective approaches. They do not require an explicit vectorial representation of the data in terms of features, but rely on a measure of similarity between any pair of objects of a domain, the kernel function. Designing fast and good kernel functions is a challenging problem. In the case of tree structured data two issues become relevant: kernel for trees should not be sparse and should be fast to compute. The sparsity problem arises when, given a dataset and a kernel function, most structures of the dataset are completely dissimilar to one another. In those cases the classifier has too few information for making correct predictions on unseen data. In fact, it tends to produce a discriminating function behaving as the nearest neighbour rule. Sparsity is likely to arise for some standard tree kernel functions, such as the subtree and subset tree kernel, when they are applied to datasets with node labels belonging to a large domain. A second drawback of using tree kernels is the time complexity required both in learning and classification phases. Such a complexity can sometimes prevents the kernel application in scenarios involving large amount of data. This thesis proposes three contributions for resolving the above issues of kernel for trees. A first contribution aims at creating kernel functions which adapt to the statistical properties of the dataset, thus reducing its sparsity with respect to traditional tree kernel functions. Specifically, we propose to encode the input trees by an algorithm able to project the data onto a lower dimensional space with the property that similar structures are mapped similarly. By building kernel functions on the lower dimensional representation, we are able to perform inexact matchings between different inputs in the original space. A second contribution is the proposal of a novel kernel function based on the convolution kernel framework. Convolution kernel measures the similarity of two objects in terms of the similarities of their subparts. Most convolution kernels are based on counting the number of shared substructures, partially discarding information about their position in the original structure. The kernel function we propose is, instead, especially focused on this aspect. A third contribution is devoted at reducing the computational burden related to the calculation of a kernel function between a tree and a forest of trees, which is a typical operation in the classification phase and, for some algorithms, also in the learning phase. We propose a general methodology applicable to convolution kernels. Moreover, we show an instantiation of our technique when kernels such as the subtree and subset tree kernels are employed. In those cases, Direct Acyclic Graphs can be used to compactly represent shared substructures in different trees, thus reducing the computational burden and storage requirements

Kernel Interpolation for Scalable Structured Gaussian Processes (KISS-GP)

We introduce a new structured kernel interpolation (SKI) framework, which generalises and unifies inducing point methods for scalable Gaussian processes (GPs). SKI methods produce kernel approximations for fast computations through kernel interpolation. The SKI framework clarifies how the quality of an inducing point approach depends on the number of inducing (aka interpolation) points, interpolation strategy, and GP covariance kernel. SKI also provides a mechanism to create new scalable kernel methods, through choosing different kernel interpolation strategies. Using SKI, with local cubic kernel interpolation, we introduce KISS-GP, which is 1) more scalable than inducing point alternatives, 2) naturally enables Kronecker and Toeplitz algebra for substantial additional gains in scalability, without requiring any grid data, and 3) can be used for fast and expressive kernel learning. KISS-GP costs O(n) time and storage for GP inference. We evaluate KISS-GP for kernel matrix approximation, kernel learning, and natural sound modelling.Comment: 19 pages, 4 figure

Kernel methods in machine learning

We review machine learning methods employing positive definite kernels. These methods formulate learning and estimation problems in a reproducing kernel Hilbert space (RKHS) of functions defined on the data domain, expanded in terms of a kernel. Working in linear spaces of function has the benefit of facilitating the construction and analysis of learning algorithms while at the same time allowing large classes of functions. The latter include nonlinear functions as well as functions defined on nonvectorial data. We cover a wide range of methods, ranging from binary classifiers to sophisticated methods for estimation with structured data.Comment: Published in at http://dx.doi.org/10.1214/009053607000000677 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org

Efficient Online Learning for Mapping Kernels on Linguistic Structures

Kernel methods are popular and effective techniques for learn- ing on structured data, such as trees and graphs. One of their major drawbacks is the computational cost related to making a prediction on an example, which manifests in the classifica- tion phase for batch kernel methods, and especially in online learning algorithms. In this paper, we analyze how to speed up the prediction when the kernel function is an instance of the Mapping Kernels, a general framework for specifying ker- nels for structured data which extends the popular convolution kernel framework. We theoretically study the general model, derive various optimization strategies and show how to apply them to popular kernels for structured data. Additionally, we derive a reliable empirical evidence on semantic role labeling task, which is a natural language classification task, highly dependent on syntactic trees. The results show that our faster approach can clearly improve on standard kernel-based SVMs, which cannot run on very large datasets