12,405 research outputs found
A survey of statistical network models
Networks are ubiquitous in science and have become a focal point for
discussion in everyday life. Formal statistical models for the analysis of
network data have emerged as a major topic of interest in diverse areas of
study, and most of these involve a form of graphical representation.
Probability models on graphs date back to 1959. Along with empirical studies in
social psychology and sociology from the 1960s, these early works generated an
active network community and a substantial literature in the 1970s. This effort
moved into the statistical literature in the late 1970s and 1980s, and the past
decade has seen a burgeoning network literature in statistical physics and
computer science. The growth of the World Wide Web and the emergence of online
networking communities such as Facebook, MySpace, and LinkedIn, and a host of
more specialized professional network communities has intensified interest in
the study of networks and network data. Our goal in this review is to provide
the reader with an entry point to this burgeoning literature. We begin with an
overview of the historical development of statistical network modeling and then
we introduce a number of examples that have been studied in the network
literature. Our subsequent discussion focuses on a number of prominent static
and dynamic network models and their interconnections. We emphasize formal
model descriptions, and pay special attention to the interpretation of
parameters and their estimation. We end with a description of some open
problems and challenges for machine learning and statistics.Comment: 96 pages, 14 figures, 333 reference
Variational Inference for Stochastic Block Models from Sampled Data
This paper deals with non-observed dyads during the sampling of a network and
consecutive issues in the inference of the Stochastic Block Model (SBM). We
review sampling designs and recover Missing At Random (MAR) and Not Missing At
Random (NMAR) conditions for the SBM. We introduce variants of the variational
EM algorithm for inferring the SBM under various sampling designs (MAR and
NMAR) all available as an R package. Model selection criteria based on
Integrated Classification Likelihood are derived for selecting both the number
of blocks and the sampling design. We investigate the accuracy and the range of
applicability of these algorithms with simulations. We explore two real-world
networks from ethnology (seed circulation network) and biology (protein-protein
interaction network), where the interpretations considerably depends on the
sampling designs considered
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Community detection in network analysis: a survey
The existence of community structures in networks is not unusual, including in the domains of sociology, biology, and business, etc. The characteristic of the community structure is that nodes of the same community are highly similar while on the contrary, nodes across communities present low similarity.
In academia, there is a surge in research efforts on community detection in network analysis, especially in developing statistically sound methodologies for exploring, modeling, and interpreting these kind of structures and relationships.
This survey paper aims to provide a brief review of current applicable
statistical methodologies and approaches in a comparative manner along with metrics for evaluating graph clustering results and application using R. At the
end, we provide promising future research directions.Statistic
Mixed membership stochastic blockmodels
Observations consisting of measurements on relationships for pairs of objects
arise in many settings, such as protein interaction and gene regulatory
networks, collections of author-recipient email, and social networks. Analyzing
such data with probabilisic models can be delicate because the simple
exchangeability assumptions underlying many boilerplate models no longer hold.
In this paper, we describe a latent variable model of such data called the
mixed membership stochastic blockmodel. This model extends blockmodels for
relational data to ones which capture mixed membership latent relational
structure, thus providing an object-specific low-dimensional representation. We
develop a general variational inference algorithm for fast approximate
posterior inference. We explore applications to social and protein interaction
networks.Comment: 46 pages, 14 figures, 3 table
Machine Learning and Integrative Analysis of Biomedical Big Data.
Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues
Modeling heterogeneity in random graphs through latent space models: a selective review
We present a selective review on probabilistic modeling of heterogeneity in
random graphs. We focus on latent space models and more particularly on
stochastic block models and their extensions that have undergone major
developments in the last five years
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