41 research outputs found

    Inversions in Split Trees and Conditional Galton-Watson Trees

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    We study I(T), the number of inversions in a tree T with its vertices labeled uniformly at random. We first show that the cumulants of I(T) have explicit formulas. Then we consider X_n, the normalized version of I(T_n), for a sequence of trees T_n. For fixed T_n\u27s, we prove a sufficient condition for X_n to converge in distribution. For T_n being split trees [Devroye, 1999], we show that X_n converges to the unique solution of a distributional equation. Finally, when T_n\u27s are conditional Galton-Watson trees, we show that X_n converges to a random variable defined in terms of Brownian excursions. Our results generalize and extend previous work by Panholzer and Seitz [Panholzer and Seitz, 2012]

    Permutations in Binary Trees and Split Trees

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    We investigate the number of permutations that occur in random node labellings of trees. This is a generalisation of the number of subpermutations occuring in a random permutation. It also generalises some recent results on the number of inversions in randomly labelled trees [Cai et al., 2017]. We consider complete binary trees as well as random split trees a large class of random trees of logarithmic height introduced by Devroye [Devroye, 1998]. Split trees consist of nodes (bags) which can contain balls and are generated by a random trickle down process of balls through the nodes. For complete binary trees we show that asymptotically the cumulants of the number of occurrences of a fixed permutation in the random node labelling have explicit formulas. Our other main theorem is to show that for a random split tree with high probability the cumulants of the number of occurrences are asymptotically an explicit parameter of the split tree. For the proof of the second theorem we show some results on the number of embeddings of digraphs into split trees which may be of independent interest

    Probability, Trees and Algorithms

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    The subject of this workshop were probabilistic aspects of algorithms for fundamental problems such as sorting, searching, selecting of and within data, random permutations, algorithms based on combinatorial trees or search trees, continuous limits of random trees and random graphs as well as random geometric graphs. The deeper understanding of the complexity of such algorithms and of shape characteristics of large discrete structures require probabilistic models and an asymptotic analysis of random discrete structures. The talks of this workshop focused on probabilistic, combinatorial and analytic techniques to study asymptotic properties of large random combinatorial structures

    Embedding Small Digraphs and Permutations in Binary Trees and Split Trees

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    We investigate the number of permutations that occur in random labellings of trees. This is a generalisation of the number of subpermutations occurring in a random permutation. It also generalises some recent results on the number of inversions in randomly labelled trees (Cai et al. in Combin Probab Comput 28(3):335-364, 2019). We consider complete binary trees as well as random split trees a large class of random trees of logarithmic height introduced by Devroye (SIAM J Comput 28(2):409-432, 1998. 10.1137/s0097539795283954). Split trees consist of nodes (bags) which can contain balls and are generated by a random trickle down process of balls through the nodes. For complete binary trees we show that asymptotically the cumulants of the number of occurrences of a fixed permutation in the random node labelling have explicit formulas. Our other main theorem is to show that for a random split tree, with probability tending to one as the number of balls increases, the cumulants of the number of occurrences are asymptotically an explicit parameter of the split tree. For the proof of the second theorem we show some results on the number of embeddings of digraphs into split trees which may be of independent interest

    Efficient ancestry and mutation simulation with msprime 1.0

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    Stochastic simulation is a key tool in population genetics, since the models involved are often analytically intractable and simulation is usually the only way of obtaining ground-truth data to evaluate inferences. Because of this, a large number of specialized simulation programs have been developed, each filling a particular niche, but with largely overlapping functionality and a substantial duplication of effort. Here, we introduce msprime version 1.0, which efficiently implements ancestry and mutation simulations based on the succinct tree sequence data structure and the tskit library. We summarize msprime’s many features, and show that its performance is excellent, often many times faster and more memory efficient than specialized alternatives. These high-performance features have been thoroughly tested and validated, and built using a collaborative, open source development model, which reduces duplication of effort and promotes software quality via community engagement
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