Identification of Gastroenteric Viruses by Electron Microscopy Using Higher Order Spectral Features

Background: Many paediatric illnesses are caused by viral agents, for example, acute gastroenteritis. Electron microscopy can provide images of viral particles and can be used to identify the agents. Objectives: The use of electron microscopy as a diagnostic tool is limited by the need for high level of expertise in interpreting these images and the time required. A semi-automated method is proposed in this paper. Study design: The method is based on bispectal features that capture contour and texture information while providing robustness to shift, rotation, changes in size and noise. The magnification or true size of the viral particles need not be known precisely, but if available can be used additionally for improved classification. Viral particles from one or more images are segmented and analyzed to verify whether they belong to a particular class (such as Adenovirus, Rotavirus, etc.) or not. Two experiments were conducted—depending on the populations from which virus particle images were collected for training and testing, respectively. In the first, disjoint subsets from a pooled population of virus particles obtained from several images were used. In the second, separate populations from separate images were used. The performance of the method on viruses of similar size was separately evaluated using Astrovirus, HAV and Poliovirus. A Gaussian Mixture Model was used for the probability density of the features. A threshold on the log-likelihood is varied to study false alarm and false rejection trade-off. Features from many particles and/or likelihoods from independent tests are averaged to yield better performance. Results: An equal error rate (EER) of 2% is obtained for verification of Rotavirus (tested against three other viruses) when features from 15 viral particle images are averaged. It drops further to less than 0.2% when scores from two tests are averaged to make a decision. For verification of Astrovirus (tested against two others of the same size) the EER was less than 2% when 20 particles and two tests were used. Conclusion: Bispectral features and Gaussian mixture modelling of their probability density are shown to be effective in identifying viruses from electron microscope images. With the use of digital imaging in electron microscopes, this method can be fully automated

Detection of Mines in Acoustic Images using Higher Order Spectral Features

A new pattern-recognition algorithm detects approximately 90% of the mines hidden in the Coastal Systems Station Sonar0, 1, and 3 databases of cluttered acoustic images, with about 10% false alarms. Similar to other approaches, the algorithm presented here includes processing the images with an adaptive Wiener filter (the degree of smoothing depends on the signal strength in a local neighborhood) to remove noise without destroying the structural information in the mine shapes, followed by a two-dimensional FIR filter designed to suppress noise and clutter, while enhancing the target signature. A double peak pattern is produced as the FIR filter passes over mine highlight and shadow regions. Although the location, size, and orientation of this pattern within a region of the image can vary, features derived from higher order spectra (HOS) are invariant to translation, rotation, and scaling, while capturing the spatial correlations of mine-like objects. Classification accuracy is improved by combining features based on geometrical properties of the filter output with features based on HOS. The highest accuracy is obtained by fusing classification based on bispectral features with classification based on trispectral features

Blind Restoration of Motion Blurred Barcode Images using Ridgelet Transform and Radial Basis Function Neural Network

The aim of any image restoration techniques is recovering the original image from a degraded observation. One of the most common degradation phenomena in images is motion blur. In case of blind image restoration accurate estimation of motion blur parameters is required for deblurring of such images. This paper proposed a novel technique for estimating the parameters of motion blur using ridgelet transform. Initially, the energy of ridgelet coefficients is used to estimate the blur angle and then blur length is estimated using a radial biases function neural network. This work is tested on different barcode images with varying parameters of blur. The simulation results show that the proposed method improves the restoration performance

Astrophysics and cosmology with the scattering transform

Quantifying textures and patterns in physical data is an important but challenging task. Recently, a novel statistic borrowing ideas from convolutional neural networks (CNNs), called the scattering transform, has shown its great potential. It is a sweet spot between the power spectrum and CNNs: it yields a compact set of summary statistics with a simple definition while sharing the high performance of CNNs. In this thesis, I provide intuitive understandings and interpretations for the scattering transform. I also discuss its connection to and advantages over other common statistics such as the N-point functions. I argue that its informativeness, robustness, compactness, and interpretability make it an ideal statistic for practical data analysis of fields with complex structures. Then, I show promising examples of its applications in physics research, including rigid parameter inference tasks in cosmology, where it has a performance on a par with CNNs and exploratory data analyses in astronomy and oceanography

Champs à phase aléatoire et champs gaussiens pour la mesure de netteté d’images et la synthèse rapide de textures

This thesis deals with the Fourier phase structure of natural images, and addresses no-reference sharpness assessment and fast texture synthesis by example. In Chapter 2, we present several models of random fields in a unified framework, like the spot noise model and the Gaussian model, with particular attention to the spectral representation of these random fields. In Chapter 3, random phase models are used to perform by-example synthesis of microtextures (textures with no salient features). We show that a microtexture can be summarized by a small image that can be used for fast and flexible synthesis based on the spot noise model. Besides, we address microtexture inpainting through the use of Gaussian conditional simulation. In Chapter 4, we present three measures of the global Fourier phase coherence. Their link with the image sharpness is established based on a theoretical and practical study. We then derive a stochastic optimization scheme for these indices, which leads to a blind deblurring algorithm. Finally, in Chapter 5, after discussing the possibility of direct phase analysis or synthesis, we propose two non random phase texture models which allow for synthesis of more structured textures and still have simple mathematical guarantees.Dans cette thèse, on étudie la structuration des phases de la transformée de Fourier d'images naturelles, ce qui, du point de vue applicatif, débouche sur plusieurs mesures de netteté ainsi que sur des algorithmes rapides pour la synthèse de texture par l'exemple. Le Chapitre 2 présente dans un cadre unifié plusieurs modèles de champs aléatoires, notamment les champs spot noise et champs gaussiens, en prêtant une attention particulière aux représentations fréquentielles de ces champs aléatoires. Le Chapitre 3 détaille l'utilisation des champs à phase aléatoire à la synthèse de textures peu structurées (microtextures). On montre qu'une microtexture peut être résumée en une image de petite taille s'intégrant à un algorithme de synthèse très rapide et flexible via le modèle spot noise. Aussi on propose un algorithme de désocclusion de zones texturales uniformes basé sur la simulation gaussienne conditionnelle. Le Chapitre 4 présente trois mesures de cohérence globale des phases de la transformée de Fourier. Après une étude théorique et pratique établissant leur lien avec la netteté d'image, on propose un algorithme de déflouage aveugle basé sur l'optimisation stochastique de ces indices. Enfin, dans le Chapitre 5, après une discussion sur l'analyse et la synthèse directe de l'information de phase, on propose deux modèles de textures à phases cohérentes qui permettent la synthèse de textures plus structurées tout en conservant quelques garanties mathématiques simples

Brain Computer Interfaces and Emotional Involvement: Theory, Research, and Applications

This reprint is dedicated to the study of brain activity related to emotional and attentional involvement as measured by Brain–computer interface (BCI) systems designed for different purposes. A BCI system can translate brain signals (e.g., electric or hemodynamic brain activity indicators) into a command to execute an action in the BCI application (e.g., a wheelchair, the cursor on the screen, a spelling device or a game). These tools have the advantage of having real-time access to the ongoing brain activity of the individual, which can provide insight into the user’s emotional and attentional states by training a classification algorithm to recognize mental states. The success of BCI systems in contemporary neuroscientific research relies on the fact that they allow one to “think outside the lab”. The integration of technological solutions, artificial intelligence and cognitive science allowed and will allow researchers to envision more and more applications for the future. The clinical and everyday uses are described with the aim to invite readers to open their minds to imagine potential further developments

Radar target classification by micro-Doppler contributions

This thesis studies non-cooperative automatic radar target classification. Recent developments in silicon-germanium and monolithic microwave integrated circuit technologies allows to build cheap and powerful continuous wave radars. Availability of radars opens new applications in different areas. One of these applications is security. Radars could be used for surveillance of huge areas and detect unwanted moving objects. Determination of the type of the target is essential for such systems. Microwave radars use high frequencies that reflect from objects of millimetre size. The micro-Doppler signature of a target is a time-varying frequency modulated contribution that arose in radar backscattering and caused by the relative movement of separate parts of the target. The micro-Doppler phenomenon allows to classify non-rigid moving objects by analysing their signatures. This thesis is focused on designing of automatic target classification systems based on analysis of micro-Doppler signatures. Analysis of micro-Doppler radar signatures is usually performed by second-order statistics, i.e. common energy-based power spectra and spectrogram. However, the information about phase coupling content in backscattering is totally lost in these energy-based statistics. This useful phase coupling content can be extracted by higher-order spectral techniques. We show that this content is useful for radar target classification in terms of improved robustness to various corruption factors. A problem of unmanned aerial vehicle (UAV) classification using continuous wave radar is covered in the thesis. All steps of processing required to make a decision out of the raw radar data are considered. A novel feature extraction method is introduced. It is based on eigenpairs extracted from the correlation matrix of the signature. Different classes of UAVs are successfully separated in feature space by support vector machine. Within experiments or real radar data, achieved high classification accuracy proves the efficiency of the proposed solutions. Thesis also covers several applications of the automotive radar due to very high growth in technologies for intelligent vehicle radar systems. Such radars are already build-in in the vehicle and ready for new applications. We consider two novel applications. First application is a multi-sensor fusion of video camera and radar for more efficient vehicle-to-vehicle video transmission. Second application is a frequency band invariant pedestrian classification by an automotive radar. This system allows us to use the same signal processing hardware/software for different countries where regulations vary and radars with different operating frequency are required. We consider different radar applications: ground moving target classification, aerial target classification, unmanned aerial vehicles classification, pedestrian classification. The highest priority is given to verification of proposed methods on real radar data collected with frequencies equal to 9.5, 10, 16.8, 24 and 33 GHz