17 research outputs found

    Efficient interaction with large medical imaging databases

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    Everyday, a wide quantity of hospitals and medical centers around the world are producing large amounts of imaging content to support clinical decisions, medical research, and education. With the current trend towards Evidence-based medicine, there is an increasing need of strategies that allow pathologists to properly interact with the valuable information such imaging repositories host and extract relevant content for supporting decision making. Unfortunately, current systems are very limited at providing access to content and extracting information from it because of different semantic and computational challenges. This thesis presents a whole pipeline, comprising 3 building blocks, that aims to to improve the way pathologists and systems interact. The first building block consists in an adaptable strategy oriented to ease the access and visualization of histopathology imaging content. The second block explores the extraction of relevant information from such imaging content by exploiting low- and mid-level information obtained from from morphology and architecture of cell nuclei. The third block aims to integrate high-level information from the expert in the process of identifying relevant information in the imaging content. This final block not only attempts to deal with the semantic gap but also to present an alternative to manual annotation, a time consuming and prone-to-error task. Different experiments were carried out and demonstrated that the introduced pipeline not only allows pathologist to navigate and visualize images but also to extract diagnostic and prognostic information that potentially could support clinical decisions.Resumen: Diariamente, gran cantidad de hospitales y centros médicos de todo el mundo producen grandes cantidades de imágenes diagnósticas para respaldar decisiones clínicas y apoyar labores de investigación y educación. Con la tendencia actual hacia la medicina basada en evidencia, existe una creciente necesidad de estrategias que permitan a los médicos patólogos interactuar adecuadamente con la información que albergan dichos repositorios de imágenes y extraer contenido relevante que pueda ser empleado para respaldar la toma de decisiones. Desafortunadamente, los sistemas actuales son muy limitados en cuanto al acceso y extracción de contenido de las imágenes debido a diferentes desafíos semánticos y computacionales. Esta tesis presenta un marco de trabajo completo para patología, el cual se compone de 3 bloques y tiene como objetivo mejorar la forma en que interactúan los patólogos y los sistemas. El primer bloque de construcción consiste en una estrategia adaptable orientada a facilitar el acceso y la visualización del contenido de imágenes histopatológicas. El segundo bloque explora la extracción de información relevante de las imágenes mediante la explotación de información de características visuales y estructurales de la morfología y la arquitectura de los núcleos celulares. El tercer bloque apunta a integrar información de alto nivel del experto en el proceso de identificación de información relevante en las imágenes. Este bloque final no solo intenta lidiar con la brecha semántica, sino que también presenta una alternativa a la anotación manual, una tarea que demanda mucho tiempo y es propensa a errores. Se llevaron a cabo diferentes experimentos que demostraron que el marco de trabajo presentado no solo permite que el patólogo navegue y visualice imágenes, sino que también extraiga información de diagnóstico y pronóstico que potencialmente podría respaldar decisiones clínicas.Doctorad

    Learned-based Intra Coding Tools for Video Compression.

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    PhD Theses.The increase in demand for video rendering in 4K and beyond displays, as well as immersive video formats, requires the use of e cient compression techniques. In this thesis novel methods for enhancing the e ciency of current and next generation video codecs are investigated. Several aspects that in uence the way conventional video coding methods work are considered. The methods proposed in this thesis utilise Neural Networks (NNs) trained for regression tasks in order to predict data. In particular, Convolutional Neural Networks (CNNs) are used to predict Rate-Distortion (RD) data for intra-coded frames. Moreover, a novel intra-prediction methods are proposed with the aim of providing new ways to exploit redundancies overlooked by traditional intraprediction tools. Additionally, it is shown how such methods can be simpli ed in order to derive less resource-demanding tools

    2022 Review of Data-Driven Plasma Science

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    Data-driven science and technology offer transformative tools and methods to science. This review article highlights the latest development and progress in the interdisciplinary field of data-driven plasma science (DDPS), i.e., plasma science whose progress is driven strongly by data and data analyses. Plasma is considered to be the most ubiquitous form of observable matter in the universe. Data associated with plasmas can, therefore, cover extremely large spatial and temporal scales, and often provide essential information for other scientific disciplines. Thanks to the latest technological developments, plasma experiments, observations, and computation now produce a large amount of data that can no longer be analyzed or interpreted manually. This trend now necessitates a highly sophisticated use of high-performance computers for data analyses, making artificial intelligence and machine learning vital components of DDPS. This article contains seven primary sections, in addition to the introduction and summary. Following an overview of fundamental data-driven science, five other sections cover widely studied topics of plasma science and technologies, i.e., basic plasma physics and laboratory experiments, magnetic confinement fusion, inertial confinement fusion and high-energy-density physics, space and astronomical plasmas, and plasma technologies for industrial and other applications. The final section before the summary discusses plasma-related databases that could significantly contribute to DDPS. Each primary section starts with a brief introduction to the topic, discusses the state-of-the-art developments in the use of data and/or data-scientific approaches, and presents the summary and outlook. Despite the recent impressive signs of progress, the DDPS is still in its infancy. This article attempts to offer a broad perspective on the development of this field and identify where further innovations are required

    Diagnostic Accuracy of Tele-ophthalmology for Diabetic Retinopathy Assessment: A Meta-analysis and Economic Analysis

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    Tele-ophthalmology is a screening alternative that facilitates compliance to eye care guidelines regardless of geographic constraints, promoting adequate delivery of health services to underserved communities. We conducted a systematic review and meta-analysis to assess the diagnostic performance of tele-ophthalmology (TO) programs for the detection of diabetic retinopathy (DR), and used decision-tree modeling to explore its cost-effectiveness compared to in-person examination in a semi-urban scenario. From the 1,060 articles initially identified, 23 met inclusion criteria for data extraction. The diagnostic performance of TO for the detection of any DR and referable DR met the minimum diagnostic criteria by the Canadian Ophthalmological Society (sensitivity \u3e80%, specificity \u3e90%). Interpretation of clinical significance is limited due to significant heterogeneity. Considering a semi-urban scenario, the incremental cost per additional case of any DR detected after the introduction of pharmacy-based TO was $314.1, being more costly and more effective than in-person examination

    BlogForever: D3.1 Preservation Strategy Report

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    This report describes preservation planning approaches and strategies recommended by the BlogForever project as a core component of a weblog repository design. More specifically, we start by discussing why we would want to preserve weblogs in the first place and what it is exactly that we are trying to preserve. We further present a review of past and present work and highlight why current practices in web archiving do not address the needs of weblog preservation adequately. We make three distinctive contributions in this volume: a) we propose transferable practical workflows for applying a combination of established metadata and repository standards in developing a weblog repository, b) we provide an automated approach to identifying significant properties of weblog content that uses the notion of communities and how this affects previous strategies, c) we propose a sustainability plan that draws upon community knowledge through innovative repository design

    Semantic discovery and reuse of business process patterns

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    Patterns currently play an important role in modern information systems (IS) development and their use has mainly been restricted to the design and implementation phases of the development lifecycle. Given the increasing significance of business modelling in IS development, patterns have the potential of providing a viable solution for promoting reusability of recurrent generalized models in the very early stages of development. As a statement of research-in-progress this paper focuses on business process patterns and proposes an initial methodological framework for the discovery and reuse of business process patterns within the IS development lifecycle. The framework borrows ideas from the domain engineering literature and proposes the use of semantics to drive both the discovery of patterns as well as their reuse

    Cultural Heritage on line

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    The 2nd International Conference "Cultural Heritage online – Empowering users: an active role for user communities" was held in Florence on 15-16 December 2009. It was organised by the Fondazione Rinascimento Digitale, the Italian Ministry for Cultural Heritage and Activities and the Library of Congress, through the National Digital Information Infrastructure and Preservation Program - NDIIP partners. The conference topics were related to digital libraries, digital preservation and the changing paradigms, focussing on user needs and expectations, analysing how to involve users and the cultural heritage community in creating and sharing digital resources. The sessions investigated also new organisational issues and roles, and cultural and economic limits from an international perspective

    A Statistical Approach to the Alignment of fMRI Data

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    Multi-subject functional Magnetic Resonance Image studies are critical. The anatomical and functional structure varies across subjects, so the image alignment is necessary. We define a probabilistic model to describe functional alignment. Imposing a prior distribution, as the matrix Fisher Von Mises distribution, of the orthogonal transformation parameter, the anatomical information is embedded in the estimation of the parameters, i.e., penalizing the combination of spatially distant voxels. Real applications show an improvement in the classification and interpretability of the results compared to various functional alignment methods
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