Performance comparison of interference alignment algorithms in an energy harvesting scenario

Proceeding of: 12th IEEE/IET International Symposium on Communication Systems, Networks and Digital Signal Processing, (CSNDSP), 20-22, July 2020, (Online).Energy-efficient interference alignment (IA) algorithms that simultaneously satisfy continuous coverage and green communications requirements are an open problem in 5G cellular networks. IA is one of the most promising techniques to eliminate interference. However, a recent assumption in green communications is to utilize interference signals as an energy supply for electronic devices. In this scenario, simultaneous wireless information and power transfer (SWIPT) schemes are a common technique to harvest energy from wireless signals. This paper addresses a performance comparison of different IA algorithms to guarantee the best trade-off between sum-rate and the amount of harvested energy, with an in-depth analysis.This work has received funding from the European Union (EU) Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie ETN TeamUp5G, grant agreement No. 813391. Also, this work has been supported in part by the Spanish National Project TERESA-ADA, funded by (MINECO/AEI/FEDER, UE) under grant TEC2017-90093-C3-2-R

Introduction to the Modeling and Analysis of Complex Systems

Keep up to date on Introduction to Modeling and Analysis of Complex Systems at http://bingweb.binghamton.edu/~sayama/textbook/! Introduction to the Modeling and Analysis of Complex Systems introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science. Complex systems are systems made of a large number of microscopic components interacting with each other in nontrivial ways. Many real-world systems can be understood as complex systems, where critically important information resides in the relationships between the parts and not necessarily within the parts themselves. This textbook offers an accessible yet technically-oriented introduction to the modeling and analysis of complex systems. The topics covered include: fundamentals of modeling, basics of dynamical systems, discrete-time models, continuous-time models, bifurcations, chaos, cellular automata, continuous field models, static networks, dynamic networks, and agent-based models. Most of these topics are discussed in two chapters, one focusing on computational modeling and the other on mathematical analysis. This unique approach provides a comprehensive view of related concepts and techniques, and allows readers and instructors to flexibly choose relevant materials based on their objectives and needs. Python sample codes are provided for each modeling example. This textbook is available for purchase in both grayscale and color via Amazon.com and CreateSpace.com.https://knightscholar.geneseo.edu/oer-ost/1013/thumbnail.jp

Predicting and identifying signs of criticality near neuronal phase transition

This thesis examines the critical transitions between distinct neural states associated with the transition to neuron spiking and with the induction of anaesthesia. First, mathematical and electronic models of a single spiking neuron are investigated, focusing on stochastic subthreshold dynamics on close approach to spiking and to depolarisation-blocked quiescence (spiking death) transition points. Theoretical analysis of subthreshold neural behaviour then shifts to the anaesthetic-induced phase transition into unconsciousness using a mean-field model for interacting populations of excitatory and inhibitory neurons. The anaesthetic-induced changes are validated experimentally using published electrophysiological data recorded in anaesthetised rats. The criticality hypothesis associated with brain state change is examined using neuronal avalanches for experimentally recorded rat local field potential (LFP) data and mean-field pseudoLFP simulation data. We compare three different implementations of the FitzHugh--Nagumo single spiking neuron model: a mathematical model by H. R. Wilson, an alternative due to Keener and Sneyd, and an op-amp based nonlinear oscillator circuit. Although all three models can produce nonlinear ``spiking" oscillations, our focus is on the altering characteristics of noise-induced fluctuations near spiking onset and death via Hopf bifurcation. We introduce small-amplitude white noise to enable a linearised stochastic analyses using Ornstein--Uhlenbeck theory to predict variance, power spectrum and correlation of voltage fluctuations during close approach to the critical point, identified as the point at which the real part of the dominant eigenvalue becomes zero. We validate the theoretical predictions with numerical simulations and show that the fluctuations exhibit critical slowing down divergences when approaching the critical point: power-law increases in the variance of the fluctuations simultaneous with prolongation of the system response. We expand the study of stochastic behaviour to two spatial dimensions using the Waikato mean-field model operating near phase transition points controlled by the infusion or elimination of anaesthetic inhibition. Specifically, we investigate close approach to the critical point (CP), and to the points of loss of consciousness (LOC) and recovery of consciousness (ROC). We select the equilibrium states using $\lambda$ anaesthetic inhibition and $\Delta V^{\text{rest}}_e$ cortical excitation as control parameters, then analyse the voltage fluctuations evoked by small-amplitude spatiotemporal white noise. We predict the variance and power spectrum of voltage fluctuations near the marginally stable LOC and ROC transition points, then validate via numerical simulation. The results demonstrate a marked increase in voltage fluctuations and spectral power near transition points. This increased susceptibility to low-intensity white noise stimulation provides an early warning of impending phase transition. Effects of anaesthetic agents on cortical activity are reflected in local field potentials (LFPs) by the variation of amplitude and frequency in voltage fluctuations. To explore these changes, we investigate LFPs acquired from published electrophysiological experiments of anaesthetised rats to extract amplitude distribution, variance and time-correlation statistics. The analysis is broadened by applying detrended fluctuation analysis (DFA) to detect long-range dependencies in the time-series, and we compare DFA results with power spectral density (PSD). We find that the DFA exponent increases with anaesthetic concentration, but is always close to 1. The penultimate chapter investigates the evidence of criticality in anaesthetic induced phase-transitions using avalanche analysis. Rat LFP data reveal an avalanche power-law exponent close to $\alpha = 1.5$, but this value depends on both the time-bin width chosen to separate the events and the \textit{z}-score threshold used to detect these events. Power-law behaviour is only evident at lower anaesthetic concentrations; at higher concentrations the avalanche size distribution fails to align with a power-law nature. Criticality behaviour is also indicated in the Waikato mean-field model for anaesthetic-induced phase-transition using avalanches detected from the pseudoLFP time-series, but only at the critical point (CP) and at the secondary phase-transition points of LOC and ROC. In summary, this thesis unveils evidence of characteristic changes near phase transition points using computer-based mathematical modelling and electrophysiological data analysis. We find that noise-driven fluctuations become larger and persist for longer as the critical point is closely approached, with similar properties being seen not only in single-neuron and neural population models, but also in biological LFP signals. These results consistent with an increase of susceptibility to noise perturbations near phase transition point. Identification of neuronal avalanches in rat LFP data for low anaesthetic concentrations provides further support for the criticality hypothesis

V2X Sidelink Positioning in FR1: Scenarios, Algorithms, and Performance Evaluation

In this paper, we investigate sub-6 GHz V2X sidelink positioning scenarios in 5G vehicular networks through a comprehensive end-to-end methodology encompassing ray-tracing-based channel modeling, novel theoretical performance bounds, high-resolution channel parameter estimation, and geometric positioning using a round-trip-time (RTT) protocol. We first derive a novel, approximate Cram\'er-Rao bound (CRB) on the connected road user (CRU) position, explicitly taking into account multipath interference, path merging, and the RTT protocol. Capitalizing on tensor decomposition and ESPRIT methods, we propose high-resolution channel parameter estimation algorithms specifically tailored to dense multipath V2X sidelink environments, designed to detect multipath components (MPCs) and extract line-of-sight (LoS) parameters. Finally, using realistic ray-tracing data and antenna patterns, comprehensive simulations are conducted to evaluate channel estimation and positioning performance, indicating that sub-meter accuracy can be achieved in sub-6 GHz V2X with the proposed algorithms

Dynamical Models of biological networks

In der Molekularbiologie sind mathematische Modelle von regulatorischen und metabolischen Netzwerken essentiell, um von einer Betrachtung isolierter Komponenten und Interaktionen zu einer systemischen Betrachtungsweise zu kommen. Genregulatorische Systeme eignen sich besonders gut zur Modellierung, da sie experimentell leicht zugänglich und manipulierbar sind. In dieser Arbeit werden verschiedene genregulatorische Netzwerke unter Zuhilfenahme von mathematischen Modellen analysiert. Weiteres wird ein Modell einer in silico Zelle vorgestellt und diskutiert. Zunächst werden zwei zyklische genregulatorische Netzwerke - der klassische Repressilator und ein Repressilator mit zusätzlicher Autoaktivierung – im Detail mit analytischen Methoden untersucht. Um den Einfluß zufällig schwankender Molekülzahlen auf die Dynamik der beiden Systeme zu untersuchen, werden stochastische Modelle erstellt und die beiden oszillierenden Systeme verglichen. Weiteres werden mögliche Auswirkungen von Genduplikationen auf ein einfaches genregulatorisches Netzwerk untersucht. Dazu wird zunächst ein kleines Netzwerk von GATA Transkriptionsfaktoren, das eine zentrale Rolle in der Regulation des Stickstoffmetabolismus in Hefe spielt, modelliert und das Modell mit experimentellen Daten verglichen, um Parameterregionen einschränken zu können. Außerdem werden potentielle Topologien genregulatorischer Netzwerke von GATA Transkriptionsfaktoren in verwandten Fungi mittels sequenzbasierender Methoden gesucht und verglichen. Im letzten Teil der Arbeit wird MiniCellSim vorgestellt, ein Modell einer selbständigen in silico Zelle. Es erlaubt ein dynamisches System, das eine Protozelle mit einem genregulatorischen Netzwerk, einem einfachen Metabolismus und einer Zellmembran beschreibt, aus einer Sequenz abzuleiten. Nachdem alle Parameter, die zur Berechnung des dynamischen Systems benötigt werden, ohne zusätzliche Eingabe nur aus der Sequenzinformation abgeleitet werden, kann das Modell für Studien zur Evolution von genregulatorischen Netzwerken verwendet werden.In this thesis different types of gene regulatory networks are analysed using mathematical models. Further a computational framework of a novel, self-contained in silico cell model is described and discussed. At first the behaviour of two cyclic gene regulatory systems - the classical repressilator and a repressilator with additional auto-activation - are inspected in detail using analytical bifurcation analysis. To examine the behaviour under random fluctuations, stochastic versions of the systems are created. Using the analytical results sustained oscillations in the stochastic versions are obtained, and the two oscillating systems compared. In the second part of the thesis possible implications of gene duplication on a simple gene regulatory system are inspected. A model of a small network formed by GATA-type transcription factors, central in nitrogen catabolite repression in yeast, is created and validated against experimental data to obtain approximate parameter values. Further, topologies of potential gene regulatory networks and modules consisting of GATA-type transcription factors in other fungi are derived using sequence-based approaches and compared. The last part describes MiniCellSim, a model of a self-contained in silico cell. In this framework a dynamical system describing a protocell with a gene regulatory network, a simple metabolism, and a cell membrane is derived from a string representing a genome. All the relevant parameters required to compute the time evolution of the dynamical system are calculated from within the model, allowing the system to be used in studies of evolution of gene regulatory and metabolic networks

Online Model-based Estimation for Automated Optical System Alignment and Phase Retrieval Algorithm

Online model-based estimation is applied to two major applications in optics: Automated optical component alignment and wavefront reconstruction with simultaneous system parameter estimation. Both applications utilize mechanical perturbation in the optical system to generate phase diversity in real-time stochastic systems. The first part of this study proposes a novel automated alignment method which improves efficiency and increases the flexibility of an optical system. Current optical systems with automated alignment capabilities are typically designed to include a dedicated wavefront sensor. Here, we demonstrate a self-aligning method for a reconfigurable system using only focal plane images. We define reconfigurable and reflective optical systems and simulate the images given misalignment parameters using ZEMAX software. We perform a principal component analysis (PCA) on the simulated dataset to obtain Karhunen-Loeve (KL) modes, which form the basis set whose weights are the system measurements. A model function which maps the state to the measurement is learned using nonlinear least squares fitting and serves as the measurement function for the extended Kalman filter (EKF) and unscented Kalman filter (UKF) used to estimate the state and control the system. The observability and stability of the system are discussed. We present both simulated and experimental results of the full system in operation. The second part of this study presents a novel algorithm for phase retrieval and optical system parameter estimation. Many wavefront reconstruction techniques estimate the amplitude and phase from multiple intensity measurements. One can generate phase diversity among these intensity measurements by varying certain parameters in the optical system. These parameters are subject to noise and disturbances, which might strongly degrade the accuracy of the reconstruction. The parallel algorithm iterative amplitude and phase retrieval (APR) have been proven to accurately reconstruct arbitrary wavefronts from multiple intensity measurements when system parameters are known exactly, given the ability to induce phase diversity between images. Such sets of intensity images with phase diversity can be generated by moving a lens in the optical system, but any position error on the lens will degenerate the reconstruction result. We demonstrate the use of an expectation-maximization (EM) algorithm with Kalman smoothing for recovering both the complex field and the lens position from a stack of intensity images. Our method successfully reduces the mean-squared-error of the estimated wavefront in comparison to an approach without position error estimation. We present and discuss the results of using a Kalman smoother and nonlinear least-square optimization for the estimation of the moving lens position. We modify and extend the system variable estimation method to serial phase retrieval algorithm. We present the use of iterated extended Kalman filter (IEKF) to estimate the system variables in a multiple-image phase retrieval framework. An iterated extended Kalman filter is shown to effectively reduce the normalized mean-square-error of the reconstructed wavefront by estimating the defocus and transverse shifts of a moving camera in simulation. Experiments are conducted using two different test objects, and the results clearly demonstrate the enhancement of detail and contrast of the wavefront when using the filter. A quadratic phase introduced by a convex lens is used with a binary mask as one of the test objects. The focal length estimated from the unwrapped phase agrees with the (1% tolerance) value provided by the manufacturer