4,278 research outputs found
SAFS: A Deep Feature Selection Approach for Precision Medicine
In this paper, we propose a new deep feature selection method based on deep
architecture. Our method uses stacked auto-encoders for feature representation
in higher-level abstraction. We developed and applied a novel feature learning
approach to a specific precision medicine problem, which focuses on assessing
and prioritizing risk factors for hypertension (HTN) in a vulnerable
demographic subgroup (African-American). Our approach is to use deep learning
to identify significant risk factors affecting left ventricular mass indexed to
body surface area (LVMI) as an indicator of heart damage risk. The results show
that our feature learning and representation approach leads to better results
in comparison with others
Unsupervised Feature Learning through Divergent Discriminative Feature Accumulation
Unlike unsupervised approaches such as autoencoders that learn to reconstruct
their inputs, this paper introduces an alternative approach to unsupervised
feature learning called divergent discriminative feature accumulation (DDFA)
that instead continually accumulates features that make novel discriminations
among the training set. Thus DDFA features are inherently discriminative from
the start even though they are trained without knowledge of the ultimate
classification problem. Interestingly, DDFA also continues to add new features
indefinitely (so it does not depend on a hidden layer size), is not based on
minimizing error, and is inherently divergent instead of convergent, thereby
providing a unique direction of research for unsupervised feature learning. In
this paper the quality of its learned features is demonstrated on the MNIST
dataset, where its performance confirms that indeed DDFA is a viable technique
for learning useful features.Comment: Corrected citation formattin
Binary Patterns Encoded Convolutional Neural Networks for Texture Recognition and Remote Sensing Scene Classification
Designing discriminative powerful texture features robust to realistic
imaging conditions is a challenging computer vision problem with many
applications, including material recognition and analysis of satellite or
aerial imagery. In the past, most texture description approaches were based on
dense orderless statistical distribution of local features. However, most
recent approaches to texture recognition and remote sensing scene
classification are based on Convolutional Neural Networks (CNNs). The d facto
practice when learning these CNN models is to use RGB patches as input with
training performed on large amounts of labeled data (ImageNet). In this paper,
we show that Binary Patterns encoded CNN models, codenamed TEX-Nets, trained
using mapped coded images with explicit texture information provide
complementary information to the standard RGB deep models. Additionally, two
deep architectures, namely early and late fusion, are investigated to combine
the texture and color information. To the best of our knowledge, we are the
first to investigate Binary Patterns encoded CNNs and different deep network
fusion architectures for texture recognition and remote sensing scene
classification. We perform comprehensive experiments on four texture
recognition datasets and four remote sensing scene classification benchmarks:
UC-Merced with 21 scene categories, WHU-RS19 with 19 scene classes, RSSCN7 with
7 categories and the recently introduced large scale aerial image dataset (AID)
with 30 aerial scene types. We demonstrate that TEX-Nets provide complementary
information to standard RGB deep model of the same network architecture. Our
late fusion TEX-Net architecture always improves the overall performance
compared to the standard RGB network on both recognition problems. Our final
combination outperforms the state-of-the-art without employing fine-tuning or
ensemble of RGB network architectures.Comment: To appear in ISPRS Journal of Photogrammetry and Remote Sensin
Anatomical Priors in Convolutional Networks for Unsupervised Biomedical Segmentation
We consider the problem of segmenting a biomedical image into anatomical
regions of interest. We specifically address the frequent scenario where we
have no paired training data that contains images and their manual
segmentations. Instead, we employ unpaired segmentation images to build an
anatomical prior. Critically these segmentations can be derived from imaging
data from a different dataset and imaging modality than the current task. We
introduce a generative probabilistic model that employs the learned prior
through a convolutional neural network to compute segmentations in an
unsupervised setting. We conducted an empirical analysis of the proposed
approach in the context of structural brain MRI segmentation, using a
multi-study dataset of more than 14,000 scans. Our results show that an
anatomical prior can enable fast unsupervised segmentation which is typically
not possible using standard convolutional networks. The integration of
anatomical priors can facilitate CNN-based anatomical segmentation in a range
of novel clinical problems, where few or no annotations are available and thus
standard networks are not trainable. The code is freely available at
http://github.com/adalca/neuron.Comment: Presented at CVPR 2018. IEEE CVPR proceedings pp. 9290-929
- …