Extending the 5S Framework of Digital Libraries to support Complex Objects, Superimposed Information, and Content-Based Image Retrieval Services

Advanced services in digital libraries (DLs) have been developed and widely used to address the required capabilities of an assortment of systems as DLs expand into diverse application domains. These systems may require support for images (e.g., Content-Based Image Retrieval), Complex (information) Objects, and use of content at fine grain (e.g., Superimposed Information). Due to the lack of consensus on precise theoretical definitions for those services, implementation efforts often involve ad hoc development, leading to duplication and interoperability problems. This article presents a methodology to address those problems by extending a precisely specified minimal digital library (in the 5S framework) with formal definitions of aforementioned services. The theoretical extensions of digital library functionality presented here are reinforced with practical case studies as well as scenarios for the individual and integrative use of services to balance theory and practice. This methodology has implications that other advanced services can be continuously integrated into our current extended framework whenever they are identified. The theoretical definitions and case study we present may impact future development efforts and a wide range of digital library researchers, designers, and developers

Internet based molecular collaborative and publishing tools

The scientific electronic publishing model has hitherto been an Internet based delivery of electronic articles that are essentially replicas of their paper counterparts. They contain little in the way of added semantics that may better expose the science, assist the peer review process and facilitate follow on collaborations, even though the enabling technologies have been around for some time and are mature. This thesis will examine the evolution of chemical electronic publishing over the past 15 years. It will illustrate, which the help of two frameworks, how publishers should be exploiting technologies to improve the semantics of chemical journal articles, namely their value added features and relationships with other chemical resources on the Web. The first framework is an early exemplar of structured and scalable electronic publishing where a Web content management system and a molecular database are integrated. It employs a test bed of articles from several RSC journals and supporting molecular coordinate and connectivity information. The value of converting 3D molecular expressions in chemical file formats, such as the MOL file, into more generic 3D graphics formats, such as Web3D, is assessed. This exemplar highlights the use of metadata management for bidirectional hyperlink maintenance in electronic publishing. The second framework repurposes this metadata management concept into a Semantic Web application called SemanticEye. SemanticEye demonstrates how relationships between chemical electronic articles and other chemical resources are established. It adapts the successful semantic model used for digital music metadata management by popular applications such as iTunes. Globally unique identifiers enable relationships to be established between articles and other resources on the Web and SemanticEye implements two: the Document Object Identifier (DOI) for articles and the IUPAC International Chemical Identifier (InChI) for molecules. SemanticEye’s potential as a framework for seeding collaborations between researchers, who have hitherto never met, is explored using FOAF, the friend-of-a-friend Semantic Web standard for social networks

Processing Structured Hypermedia : A Matter of Style

With the introduction of the World Wide Web in the early nineties, hypermedia has become the uniform interface to the wide variety of information sources available over the Internet. The full potential of the Web, however, can only be realized by building on the strengths of its underlying research fields. This book describes the areas of hypertext, multimedia, electronic publishing and the World Wide Web and points out fundamental similarities and differences in approaches towards the processing of information. It gives an overview of the dominant models and tools developed in these fields and describes the key interrelationships and mutual incompatibilities. In addition to a formal specification of a selection of these models, the book discusses the impact of the models described on the software architectures that have been developed for processing hypermedia documents. Two example hypermedia architectures are described in more detail: the DejaVu object-oriented hypermedia framework, developed at the VU, and CWI's Berlage environment for time-based hypermedia document transformations

Building a semantic blog support system for gene Learning Objects on Web 2.0 environment / by Wei Yuan.

Blogging has become a popular practice on Internet in recent years, and it has been used as information publishing and participate platforms. In recent years, a style of blog called 'semantic blogs' have been introduced into the field. Semantic blogs are blogs enriched with machine-understandable metadata (Mller, Breslin, & Decker, 2005). They are an extension of regular blogs. Recently, a new web technology theory was proposed called Web 2.0. Unlike traditional web technology which only allows web users to accept information passively, Web 2.0 provides web users the option to actively modify web information. Learning Objects are digital entities deliverable over the Internet. Any number of people can access and use them simultaneously. Moreover, users can collaborate on learning objects and benefit immediately from adding their information or appending others' work to Learning Objects and share with other users over the Internet. This thesis is dedicated to the development of a semantic blog prototype for Gene Ontology annotation and navigation as a Web 2.0 support system. We are developing this semantic blog specifically because we did not find an effective system already in place that can provide support for biomedical researchers. The existing Gene Ontology systems can be classified into various categories: offline applications, client-server applications, web search engines, portals, and FTP servers. Researchers face a number of bottlenecks within the current system; all of them are based on traditional web technology with no collaboration among individual gene ontology researchers, and annotation can only be published by certain organizations. This thesis seeks the possibility to use Learning Object with Gene Ontology along with the semantic of how researchers collaborate as represented by FOAF. We have therefore introduced a new Gene ontology Annotation and navigation System. Colloquially referred to as GAS, it is based on Web 2.0 technologies with extended semantic capabilities that include Gene Ontology semantics, SCORM semantics, FOAF semantics, RSS syndication, aggregation semantics, as well as a useful and important gene ontology and annotation navigation system - Gene Ontology Navigation (GON). Our evaluation of the GAS prototype has proven to be extremely effective

Development of a conceptual graphical user interface framework for the creation of XML metadata for digital archives

This dissertation is motivated by the DFG sponsored Jonas Cohn Archive digitization project at Steinheim-Institut whose aim was to preserve and provide digital access to structured handwritten historical archive material highlighting New Kantian philosophy scattered in the correspondence, diaries and private journals kept by and written to and by Jonas Cohn. The dissertation describes a framework for processing and presenting multi-standard digital archive material. A set of standard markup schema and semantic bibliographic descriptions have been chosen to illustrate the multiple standard and hence semantic heterogeneous digital archiving process. The standards include Text Encoding Initiative (TEI), Metadata Encoding and Transmission Standard (METS) and Metadata Object Description Schema (MODS). The chosen standards best illustrate the structural contrast between the systematic archive, digitized archive and digitized text standards. Furthermore, combined digital preservation and presentation approaches offer not only the digitized texts but also metadata structured variably sized images of the archive documents enabling virtual visualization. State of the art applications focus solely on either one of the structural areas neglecting the compound idea of a virtual digital archive. The content of this work describes the requirements analysis for managing multi-structured and therefore multi-standard digital archival artefacts in textual and image form. In addition to the architecture and design, an infrastructure suitable for processing, managing and presenting such scholarly archives is sought for recognition as a digital framework useful for the preservation and access to digitized cultural resources. The proposed solution therefore includes the instrumentation of a conglomerate of existing and novel XML technology for transformations based in a centralized application. The archive can then be managed via a client-server application thereby focusing archival activities on structured data collection and information preservation illustrated in the dissertation process by the: • Development of a prototype data model allowing the integration of the relevant markup schema • Implementation of a prototype client server application handling archive processing, management and presentation and based on the data model already mentioned • Development and implementation of a role archive access user interface Furthermore as an infrastructural development serving expert archivists from the humanities, the dissertation explores methods of binding the existing XML metadata creation process to other programming languages. In doing so, one opens further for channels simplifying the metadata creation process by integrating the use of graphical user interfaces. To this end the java programming language, its swing and AWT graphical user interface libraries, associated relational persistency and enterprise client server architecture resemble a suitable environment for integrating XML metadata into main stream computing. Hence the implementation of Java XML Data Binding as part of the metadata creation framework is part and parcel of the proposed solution.Diese Arbeit geht hervor aus dem von der DFG geförderten Projekt zu Digitalisierung des Jonas Cohn Archivs im Steinheim-Institut, dessen Ziel es ist, eine strukturierte Auswahl von Handschriften des Philosophen Jonas Cohns in digitaler Form zu bewahren und den Zugang zu ihnen zu erleichtern. Die Dissertation beschreibt ein Rahmenwerk für die digitale Verarbeitung und Präsentation digitalisierter Archivinhalte und ihrer Metadaten, strukturiert anhand von mehr als einem Beschreibungsstandard. Eine Auswahl von Standard Markup Schemata und bibliographisch semantischen Beschreibungen wurde getroffen, um die Problematik darzustellen, die aus der Berücksichtigung mehrerer Standards und damit aus semantischer Heterogenität des Digitalisierungsprozesses entsteht. Diese Auswahl umfasst unter anderem die Text Encoding Initiative (TEI), Metadata Encoding and Transmission Schema (METS) und Metadata Object Description Schema (MODS) als Beispiele für Beschreibungsstandards. Diese Standards sind am besten geeignet, die strukturellen und semantischen Unterschiede zwischen den Standards eines systematisch und semantisch zu digitalisierenden Archivs darzustellen. Zusätzlich verbindet der Ansatz die digitale Bewahrung und Präsentation von digitalisierten Texten und von Metadaten strukturierter Bilder der Archivinhalte. Dies ermöglicht eine virtuelle Präsentation des digitalen Archivs. Eine große Zahl bekannter Digitalisierungsanwendungen folgt nur einer der beiden Strukturierungsziele Bewahrung und Präsentation, wodurch der Ansatz eines vollständig virtuellen digitalen Archivs vernachlässigt wird. Der Schwerpunkt dieser Arbeit ist die Beschreibung einer Managementinfrastruktur für die Erfassung und Auszeichnung von Multi-Standard Metadaten für digitale Handschriftensammlungen. Zusätzlich zu der Architektur und dem Design wird nach einer geeigneten Infrastruktur gesucht für die Erfassung, Verarbeitung und die Präsentation wissenschaftlicher Archive als digitales Rahmenwerk für den Zugang zu und die Bewahrung von Kulturbesitz. Die hier vorgeschlagene Lösung sieht deshalb die Nutzung bestehender und neuer XML Technologien vor, verknüpft in einer zentralen Anwendung. So wird im Rahmen der Dissertation die Strukturierung des Archivs mittels einer Client-Server-Anwendung betrieben und die Bewahrungsmaßnahmen als Prozess herausgearbeitet. Die Arbeit verfolgt mehrere Zielsetzungen: • Die Entwicklung eines prototypischen Datenmodells mit der Einbindung relevanter Markup Schemata • Die Implementierung einer prototypischen Client Server Anwendung für die Bearbeitung, Erfassung und Präsentation der Archive anhand des beschriebenen Datenmodells • Die Entwicklung, Implementierung und Bewertung einer Benutzerschnittstelle für die Interaktion mit dem Rahmenwerk anhand einer Expertenevaluation