13,328 research outputs found
Representing physiological processes and their participants with PhysioMaps
BACKGROUND: As the number and size of biological knowledge resources for physiology grows, researchers need improved tools for searching and integrating knowledge and physiological models. Unfortunately, current resources—databases, simulation models, and knowledge bases, for example—are only occasionally and idiosyncratically explicit about the semantics of the biological entities and processes that they describe. RESULTS: We present a formal approach, based on the semantics of biophysics as represented in the Ontology of Physics for Biology, that divides physiological knowledge into three partitions: structural knowledge, process knowledge and biophysical knowledge. We then computationally integrate these partitions across multiple structural and biophysical domains as computable ontologies by which such knowledge can be archived, reused, and displayed. Our key result is the semi-automatic parsing of biosimulation model code into PhysioMaps that can be displayed and interrogated for qualitative responses to hypothetical perturbations. CONCLUSIONS: Strong, explicit semantics of biophysics can provide a formal, computational basis for integrating physiological knowledge in a manner that supports visualization of the physiological content of biosimulation models across spatial scales and biophysical domains
Using Ontologies for the Design of Data Warehouses
Obtaining an implementation of a data warehouse is a complex task that forces
designers to acquire wide knowledge of the domain, thus requiring a high level
of expertise and becoming it a prone-to-fail task. Based on our experience, we
have detected a set of situations we have faced up with in real-world projects
in which we believe that the use of ontologies will improve several aspects of
the design of data warehouses. The aim of this article is to describe several
shortcomings of current data warehouse design approaches and discuss the
benefit of using ontologies to overcome them. This work is a starting point for
discussing the convenience of using ontologies in data warehouse design.Comment: 15 pages, 2 figure
Analyzing Tag Semantics Across Collaborative Tagging Systems
The objective of our group was to exploit state-of-the-art Information Retrieval methods for finding associations and dependencies between tags, capturing and representing differences in tagging behavior and vocabulary of various folksonomies, with the overall aim to better understand the semantics of tags and the tagging process. Therefore we analyze the semantic content of tags in the Flickr and Delicious folksonomies. We find that: tag context similarity leads to meaningful results in Flickr, despite its narrow folksonomy character; the comparison of tags across Flickr and Delicious shows little semantic overlap, being tags in Flickr associated more to visual aspects rather than technological as it seems to be in Delicious; there are regions in the tag-tag space, provided with the cosine similarity metric, that are characterized by high density; the order of tags inside a post has a semantic relevance
Multimodal Grounding for Language Processing
This survey discusses how recent developments in multimodal processing
facilitate conceptual grounding of language. We categorize the information flow
in multimodal processing with respect to cognitive models of human information
processing and analyze different methods for combining multimodal
representations. Based on this methodological inventory, we discuss the benefit
of multimodal grounding for a variety of language processing tasks and the
challenges that arise. We particularly focus on multimodal grounding of verbs
which play a crucial role for the compositional power of language.Comment: The paper has been published in the Proceedings of the 27 Conference
of Computational Linguistics. Please refer to this version for citations:
https://www.aclweb.org/anthology/papers/C/C18/C18-1197
- …