Multiclass Segmentation of Pulmonary Diseases using Convolutional Neural Network

Pulmonary disease has affected tens of millions of people in the world. This disease has also become the cause of death of millions of its sufferers every year. In addition, lung disease has also become the cause of other respiratory complications, which also causes the death of the sufferer. The diagnosis of pulmonary diseases through medical imaging is a significant challenge in computer vision and medical image processing. The difficulty is due to the wide variety in infected areas' shape, dimension, and location. Another challenge is to differentiate one lung disease from the other. Discriminating pulmonary diseases is a notable concern in the diagnosis of pulmonary disease. We have adopted the deep learning convolutional neural network in this study to address these challenges. Seven models were constructed using the Mask Region-based Convolutional Neural Network (Mask-RCNN) architecture to detect and segment infected areas within the lung region from CT scan imagery. The evaluation results show that the best model obtained scores of 91.98%, 85.25%, and 93.75% for DSC, MIoU, and mAP, respectively. The segmentation results are then visualized

Deep Semantic Segmentation of Natural and Medical Images: A Review

The semantic image segmentation task consists of classifying each pixel of an image into an instance, where each instance corresponds to a class. This task is a part of the concept of scene understanding or better explaining the global context of an image. In the medical image analysis domain, image segmentation can be used for image-guided interventions, radiotherapy, or improved radiological diagnostics. In this review, we categorize the leading deep learning-based medical and non-medical image segmentation solutions into six main groups of deep architectural, data synthesis-based, loss function-based, sequenced models, weakly supervised, and multi-task methods and provide a comprehensive review of the contributions in each of these groups. Further, for each group, we analyze each variant of these groups and discuss the limitations of the current approaches and present potential future research directions for semantic image segmentation.Comment: 45 pages, 16 figures. Accepted for publication in Springer Artificial Intelligence Revie

Deep Learning Detection in the Visible and Radio Spectrums

Deep learning models with convolutional neural networks are being used to solve some of the most difficult problems in computing today. Complicating factors to the use and development of deep learning models include lack of availability of large volumes of data, lack of problem specific samples, and the lack variations in the specific samples available. The costs to collect this data and to compute the models for the task of detection remains a inhibitory condition for all but the most well funded organizations. This thesis seeks to approach deep learning from a cost reduction and hybrid perspective — incorporating techniques of transfer learning, training augmentation, synthetic data generation, morphological computations, as well as statistical and thresholding model fusion — in the task of detection in two domains: visible spectrum detection of target spacecraft, and radio spectrum detection of radio frequency interference in 2D astronomical time-frequency data. The effects of training augmentation on object detection performance is studied in the visible spectrum, as well as the effect of image degradation on detection performance. Supplementing training on degraded images significantly improves the detection results, and in scenarios with low factors of degradation, the baseline results are exceeded. Morphological operations on degraded data shows promise in reducing computational requirements in some detection tasks. The proposed Mask R-CNN model is able to detect and localize properly on spacecraft images degraded by high levels of pixel loss. Deep learning models such as U-Net have been leveraged for the task of radio frequency interference labeling (flagging). Model variations on U-Net architecture design such as layer size and composition are continuing to be explored, however, the examination of deep learning models combined with statistical tests and thresholding techniques for radio frequency interference mitigation is in its infancy. For the radio spectrum domain, the use of the U-Net model combined with various statistical tests and the SumThreshold technique in an output fusion model is tested against a baseline of SumThreshold alone, for the detection of radio frequency interference. This thesis also contributes an improved dataset for spacecraft detection, and a simple technique for the generation of synthetic channelized voltage data for simulating radio astronomy spectra recordings in a 2D time-frequency plot