Parallel software tools at Langley Research Center

This document gives a brief overview of parallel software tools available on the Intel iPSC/860 parallel computer at Langley Research Center. It is intended to provide a source of information that is somewhat more concise than vendor-supplied material on the purpose and use of various tools. Each of the chapters on tools is organized in a similar manner covering an overview of the functionality, access information, how to effectively use the tool, observations about the tool and how it compares to similar software, known problems or shortfalls with the software, and reference documentation. It is primarily intended for users of the iPSC/860 at Langley Research Center and is appropriate for both the experienced and novice user

10181 Abstracts Collection -- Program Development for Extreme-Scale Computing

From May 2nd to May 7th, 2010, the Dagstuhl Seminar 10181 ``Program Development for Extreme-Scale Computing \u27\u27 was held in Schloss Dagstuhl~--~Leibniz Center for Informatics. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. Links to extended abstracts or full papers are provided, if available

The Graph Rewriting and Transformation Language: GReAT

In this paper, we describe the language and features of our graph transformation tool, GReAT.We begin with a brief introduction and motivation, followed by an overview of the actual language, the modeling framework, and the tools that were written to support transformations. Finally, we compare GReAT to other similar tools, discuss additional functionality we are currently implementing, and describe some of our experiences with the tool thus far

Service-Oriented Ad Hoc Grid Computing

Subject of this thesis are the design and implementation of an ad hoc Grid infrastructure. The vision of an ad hoc Grid further evolves conventional service-oriented Grid systems into a more robust, more flexible and more usable environment that is still standards compliant and interoperable with other Grid systems. A lot of work in current Grid middleware systems is focused on providing transparent access to high performance computing (HPC) resources (e.g. clusters) in virtual organizations spanning multiple institutions. The ad hoc Grid vision presented in this thesis exceeds this view in combining classical Grid components with more flexible components and usage models, allowing to form an environment combining dedicated HPC-resources with a large number of personal computers forming a "Desktop Grid". Three examples from medical research, media research and mechanical engineering are presented as application scenarios for a service-oriented ad hoc Grid infrastructure. These sample applications are also used to derive requirements for the runtime environment as well as development tools for such an ad hoc Grid environment. These requirements form the basis for the design and implementation of the Marburg ad hoc Grid Environment (MAGE) and the Grid Development Tools for Eclipse (GDT). MAGE is an implementation of a WSRF-compliant Grid middleware, that satisfies the criteria for an ad hoc Grid middleware presented in the introduction to this thesis. GDT extends the popular Eclipse integrated development environment by components that support application development both for traditional service-oriented Grid middleware systems as well as ad hoc Grid infrastructures such as MAGE. These development tools represent the first fully model driven approach to Grid service development integrated with infrastructure management components in service-oriented Grid computing. This thesis is concluded by a quantitative discussion of the performance overhead imposed by the presented extensions to a service-oriented Grid middleware as well as a discussion of the qualitative improvements gained by the overall solution. The conclusion of this thesis also gives an outlook on future developments and areas for further research. One of these qualitative improvements is "hot deployment" the ability to install and remove Grid services in a running node without interrupt to other active services on the same node. Hot deployment has been introduced as a novelty in service-oriented Grid systems as a result of the research conducted for this thesis. It extends service-oriented Grid computing with a new paradigm, making installation of individual application components a functional aspect of the application. This thesis further explores the idea of using peer-to-peer (P2P networking for Grid computing by combining a general purpose P2P framework with a standard compliant Grid middleware. In previous work the application of P2P systems has been limited to replica location and use of P2P index structures for discovery purposes. The work presented in this thesis also uses P2P networking to realize seamless communication accross network barriers. Even though the web service standards have been designed for the internet, the two-way communication requirement introduced by the WSRF-standards and particularly the notification pattern is not well supported by the web service standards. This defficiency can be answered by mechanisms that are part of such general purpose P2P communication frameworks. Existing security infrastructures for Grid systems focus on protection of data during transmission and access control to individual resources or the overall Grid environment. This thesis focuses on security issues within a single node of a dynamically changing service-oriented Grid environment. To counter the security threads arising from the new capabilities of an ad hoc Grid, a number of novel isolation solutions are presented. These solutions address security issues and isolation on a fine-grained level providing a range of applicable basic mechanisms for isolation, ranging from lightweight system call interposition to complete para-virtualization of the operating systems

Sandboxed, Online Debugging of Production Bugs for SOA Systems

Short time-to-bug localization is extremely important for any 24x7 service-oriented application. To this end, we introduce a new debugging paradigm called live debugging. There are two goals that any live debugging infrastructure must meet: Firstly, it must offer real-time insight for bug diagnosis and localization, which is paramount when errors happen in user-facing applications. Secondly, live debugging should not impact user-facing performance for normal events. In large distributed applications, bugs which impact only a small percentage of users are common. In such scenarios, debugging a small part of the application should not impact the entire system. With the above-stated goals in mind, this thesis presents a framework called Parikshan, which leverages user-space containers (OpenVZ) to launch application instances for the express purpose of live debugging. Parikshan is driven by a live-cloning process, which generates a replica (called debug container) of production services, cloned from a production container which continues to provide the real output to the user. The debug container provides a sandbox environment, for safe execution of monitoring/debugging done by the users without any perturbation to the execution environment. As a part of this framework, we have designed customized-network proxies, which replicate inputs from clients to both the production and test-container, as well safely discard all outputs. Together the network duplicator, and the debug container ensure both compute and network isolation of the debugging environment. We believe that this piece of work provides the first of its kind practical real-time debugging of large multi-tier and cloud applications, without requiring any application downtime, and minimal performance impact

A Sandbox in Which to Learn and Develop Soar Agents

It is common for military personnel to leverage simulations (and simulators) as cost-effective tools to train and become proficient at various tasks (e.g., flying an aircraft and/or performing a mission, among others). These training simulations often need to represent humans within the simulated world in a realistic manner. Realistic implies creating simulated humans that exhibit behaviors that mimic real-world decision making and actions. Typically, to create the decision-making logic, techniques developed from the domain of artificial intelligence are used. Although there are several approaches to developing intelligent agents; we focus on leveraging and open source project called Soar, to define agent behavior. This research took an off-the-shelf open-source software product (called the AI sandbox) that facilitates the creation of 3D virtual worlds and interfaced it to the Soar package. Because the world created by the sandbox is rich in features, easily configurable using a simple scripting system, and visually engaging, it\u27s ideal as a learning platform to develop Soar agents more aligned with military simulations. In summary, this research develops a platform (or learning environment) to learn how to develop Soar-based agents