The INCF Digital Atlasing Program: Report on Digital Atlasing Standards in the Rodent Brain

The goal of the INCF Digital Atlasing Program is to provide the vision and direction necessary to make the rapidly growing collection of multidimensional data of the rodent brain (images, gene expression, etc.) widely accessible and usable to the international research community. This Digital Brain Atlasing Standards Task Force was formed in May 2008 to investigate the state of rodent brain digital atlasing, and formulate standards, guidelines, and policy recommendations.

Our first objective has been the preparation of a detailed document that includes the vision and specific description of an infrastructure, systems and methods capable of serving the scientific goals of the community, as well as practical issues for achieving
the goals. This report builds on the 1st INCF Workshop on Mouse and Rat Brain Digital Atlasing Systems (Boline et al., 2007, _Nature Preceedings_, doi:10.1038/npre.2007.1046.1) and includes a more detailed analysis of both the current state and desired state of digital atlasing along with specific recommendations for achieving these goals

Personalised multilingual hypertext retrieval: An overview

The aims of the workshop on Personalised Multilingual Hypertext Retrieval (PMHR) are twofold: to set the scene in this challenging area, allowing the different communities engaged in related research topics to meet and to determine a program of actions to undertake; to devise a strategy for the evaluation of PMHR systems, which should define the collection of resources to use to evaluate such systems together with the evaluation metrics to use. The workshop results will be of use in the design of personalised tools that can help end-users fully benefit from the use of distributed multilingual hypertext content

Distributed enterprise search using software agents

In this paper we introduce a distributed information retrieval system using agent-based technology. In this multiagent system, each agent has its own specific task and can be used to handle a specific document repository. The system is designed to automatically comply with access restriction rules that are normally enforced in companies. It is used in the administration offices of the German capital city Berlin where it serves as a testbed for further research on aggregated search in an enterprise environment with roughly 50,000 employees

Information scraps: how and why information eludes our personal information management tools

In this paper we describe information scraps -- a class of personal information whose content is scribbled on Post-it notes, scrawled on corners of random sheets of paper, buried inside the bodies of e-mail messages sent to ourselves, or typed haphazardly into text files. Information scraps hold our great ideas, sketches, notes, reminders, driving directions, and even our poetry. We define information scraps to be the body of personal information that is held outside of its natural or We have much still to learn about these loose forms of information capture. Why are they so often held outside of our traditional PIM locations and instead on Post-its or in text files? Why must we sometimes go around our traditional PIM applications to hold on to our scraps, such as by e-mailing ourselves? What are information scraps' role in the larger space of personal information management, and what do they uniquely offer that we find so appealing? If these unorganized bits truly indicate the failure of our PIM tools, how might we begin to build better tools? We have pursued these questions by undertaking a study of 27 knowledge workers. In our findings we describe information scraps from several angles: their content, their location, and the factors that lead to their use, which we identify as ease of capture, flexibility of content and organization, and avilability at the time of need. We also consider the personal emotive responses around scrap management. We present a set of design considerations that we have derived from the analysis of our study results. We present our work on an application platform, jourknow, to test some of these design and usability findings

Computer-aided Melody Note Transcription Using the Tony Software: Accuracy and Efficiency

accepteddate-added: 2015-05-24 19:18:46 +0000 date-modified: 2017-12-28 10:36:36 +0000 keywords: Tony, melody, note, transcription, open source software bdsk-url-1: https://code.soundsoftware.ac.uk/attachments/download/1423/tony-paper_preprint.pdfdate-added: 2015-05-24 19:18:46 +0000 date-modified: 2017-12-28 10:36:36 +0000 keywords: Tony, melody, note, transcription, open source software bdsk-url-1: https://code.soundsoftware.ac.uk/attachments/download/1423/tony-paper_preprint.pdfWe present Tony, a software tool for the interactive an- notation of melodies from monophonic audio recordings, and evaluate its usability and the accuracy of its note extraction method. The scientific study of acoustic performances of melodies, whether sung or played, requires the accurate transcription of notes and pitches. To achieve the desired transcription accuracy for a particular application, researchers manually correct results obtained by automatic methods. Tony is an interactive tool directly aimed at making this correction task efficient. It provides (a) state-of-the art algorithms for pitch and note estimation, (b) visual and auditory feedback for easy error-spotting, (c) an intelligent graphical user interface through which the user can rapidly correct estimation errors, (d) extensive export functions enabling further processing in other applications. We show that Tony’s built in automatic note transcription method compares favourably with existing tools. We report how long it takes to annotate recordings on a set of 96 solo vocal recordings and study the effect of piece, the number of edits made and the annotator’s increasing mastery of the software. Tony is Open Source software, with source code and compiled binaries for Windows, Mac OS X and Linux available from https://code.soundsoftware.ac.uk/projects/tony/

New Frontiers of Quantified Self: Finding New Ways for Engaging Users in Collecting and Using Personal Data

In spite of the fast growth in the market of devices and applications that allow people to collect personal information, Quantified Self (QS) tools still present a variety of issues when they are used in everyday lives of common people. In this workshop we aim at exploring new ways for designing QS systems, by gathering different researchers in a unique place for imagining how the tracking, management, interpretation and visualization of personal data could be addressed in the future

Challenges in development of the American Sign Language Lexicon Video Dataset (ASLLVD) corpus

The American Sign Language Lexicon Video Dataset (ASLLVD) consists of videos of >3,300 ASL signs in citation form, each produced by 1-6 native ASL signers, for a total of almost 9,800 tokens. This dataset, including multiple synchronized videos showing the signing from different angles, will be shared publicly once the linguistic annotations and verifications are complete. Linguistic annotations include gloss labels, sign start and end time codes, start and end handshape labels for both hands, morphological and articulatory classifications of sign type. For compound signs, the dataset includes annotations for each morpheme. To facilitate computer vision-based sign language recognition, the dataset also includes numeric ID labels for sign variants, video sequences in uncompressed-raw format, camera calibration sequences, and software for skin region extraction. We discuss here some of the challenges involved in the linguistic annotations and categorizations. We also report an example computer vision application that leverages the ASLLVD: the formulation employs a HandShapes Bayesian Network (HSBN), which models the transition probabilities between start and end handshapes in monomorphemic lexical signs. Further details and statistics for the ASLLVD dataset, as well as information about annotation conventions, are available from http://www.bu.edu/asllrp/lexicon