Information Theoretic Limits for Standard and One-Bit Compressed Sensing with Graph-Structured Sparsity

In this paper, we analyze the information theoretic lower bound on the necessary number of samples needed for recovering a sparse signal under different compressed sensing settings. We focus on the weighted graph model, a model-based framework proposed by Hegde et al. (2015), for standard compressed sensing as well as for one-bit compressed sensing. We study both the noisy and noiseless regimes. Our analysis is general in the sense that it applies to any algorithm used to recover the signal. We carefully construct restricted ensembles for different settings and then apply Fano's inequality to establish the lower bound on the necessary number of samples. Furthermore, we show that our bound is tight for one-bit compressed sensing, while for standard compressed sensing, our bound is tight up to a logarithmic factor of the number of non-zero entries in the signal

Structured, sparse regression with application to HIV drug resistance

We introduce a new version of forward stepwise regression. Our modification finds solutions to regression problems where the selected predictors appear in a structured pattern, with respect to a predefined distance measure over the candidate predictors. Our method is motivated by the problem of predicting HIV-1 drug resistance from protein sequences. We find that our method improves the interpretability of drug resistance while producing comparable predictive accuracy to standard methods. We also demonstrate our method in a simulation study and present some theoretical results and connections.Comment: Published in at http://dx.doi.org/10.1214/10-AOAS428 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Learning the String Partial Order

We show that most structured prediction problems can be solved in linear time and space by considering them as partial orderings of the tokens in the input string. Our method computes real numbers for each token in an input string and sorts the tokens accordingly, resulting in as few as 2 total orders of the tokens in the string. Each total order possesses a set of edges oriented from smaller to greater tokens. The intersection of total orders results in a partial order over the set of input tokens, which is then decoded into a directed graph representing the desired structure. Experiments show that our method achieves 95.4 LAS and 96.9 UAS by using an intersection of 2 total orders, 95.7 LAS and 97.1 UAS with 4 on the English Penn Treebank dependency parsing benchmark. Our method is also the first linear-complexity coreference resolution model and achieves 79.2 F1 on the English OntoNotes benchmark, which is comparable with state of the art.Comment: 12 page