Restoration of Oyster (Crassostrea virginica) Habitat for Multiple Estuarine Species Benefits

Increase in nitrogen concentration and declining eelgrass beds in Great Bay Estuary have been observed in the last decades. These two parameters are clear indicators of the impending problems for NH’s estuaries. The NH Department of Environmental Services (DES) in collaboration with the New Hampshire Estuaries Project (NHEP) adopted the assumption that eelgrass survival can be used as the water quality target for nutrient criteria development for NH’s estuaries. One of the hypotheses put forward regarding eelgrass decline is that a possible eutrophication response to nutrient increases in the Great Bay Estuary has been the proliferation of nuisance macroalgae, which has reduced eelgrass area in Great Bay Estuary. To test this hypothesis, mapping of eelgrass and nuisance macroalgae beds using hyperspectral imagery was suggested. A hyperspectral imagery was conducted by SpecTIR in August 2007 using an AISA Eagle sensor. The collected dataset was used to map eelgrass and nuisance macroalgae throughout the Great Bay Estuary. This report outlines the configured procedure for mapping the macroalgae and eelgrass beds using hyperspectral imagery. No ground truth measurements of eelgrass or macroalgae were collected as part of this project, although eelgrass ground truth data was collected as part of a separate project. Guidance from eelgrass and macroalgae experts was used for identifying training sets and evaluating the classification results. The results produced a comprehensive eelgrass and macroalgae map of the estuary. Three recommendations are suggested following the experience gained in this study: conducting ground truth measurements at the time of the HS survey, acquiring the current DEM model of Great Bay Estuary, and examining additional HS datasets with expert eelgrass and macroalgae guidance. These three issues can improve the classification results and allow more advanced applications, such as identification of macroalgae types

Macroalgae and eelgrass mapping in Great Bay Estuary using AISA hyperspectral imagery

Increase in nitrogen concentration and declining eelgrass beds in Great Bay Estuary have been observed in the last decades. These two parameters are clear indicators of the impending problems for NH’s estuaries. The NH Department of Environmental Services (DES) in collaboration with the New Hampshire Estuaries Project (NHEP) adopted the assumption that eelgrass survival can be used as the water quality target for nutrient criteria development for NH’s estuaries. One of the hypotheses put forward regarding eelgrass decline is that a possible eutrophication response to nutrient increases in the Great Bay Estuary has been the proliferation of nuisance macroalgae, which has reduced eelgrass area in Great Bay Estuary. To test this hypothesis, mapping of eelgrass and nuisance macroalgae beds using hyperspectral imagery was suggested. A hyperspectral imagery was conducted by SpecTIR in August 2007 using an AISA Eagle sensor. The collected dataset was used to map eelgrass and nuisance macroalgae throughout the Great Bay Estuary. This report outlines the configured procedure for mapping the macroalgae and eelgrass beds using hyperspectral imagery. No ground truth measurements of eelgrass or macroalgae were collected as part of this project, although eelgrass ground truth data was collected as part of a separate project. Guidance from eelgrass and macroalgae experts was used for identifying training sets and evaluating the classification results. The results produced a comprehensive eelgrass and macroalgae map of the estuary. Three recommendations are suggested following the experience gained in this study: conducting ground truth measurements at the time of the HS survey, acquiring the current DEM model of Great Bay Estuary, and examining additional HS datasets with expert eelgrass and macroalgae guidance. These three issues can improve the classification results and allow more advanced applications, such as identification of macroalgae types

Seafloor characterization using airborne hyperspectral co-registration procedures independent from attitude and positioning sensors

The advance of remote-sensing technology and data-storage capabilities has progressed in the last decade to commercial multi-sensor data collection. There is a constant need to characterize, quantify and monitor the coastal areas for habitat research and coastal management. In this paper, we present work on seafloor characterization that uses hyperspectral imagery (HSI). The HSI data allows the operator to extend seafloor characterization from multibeam backscatter towards land and thus creates a seamless ocean-to-land characterization of the littoral zone

Using Moored Arrays and Hyperspectral Aerial Imagery to Develop Nutrient Criteria for New Hampshire\u27s Estuaries

Increasing nitrogen concentrations and declining eelgrass beds in Great Bay, NH are clear indicators of impending problems for the state’s estuaries. A workgroup established in 2005 by the NH Department of Environmental Services and the NH Estuaries Project (NHEP) adopted eelgrass survival as the water quality target for nutrient criteria development for NH’s estuaries. In 2007, the NHEP received a grant from the U.S. Environmental Protection Agency to collect water quality information including that from moored sensors and hyper-spectral imagery data of the Great Bay Estuary. Data from the Great Bay Coastal Buoy, part of the regional Integrated Ocean Observing System (IOOS), were used to derive a multivariate model of water clarity with phytoplankton, Colored Dissolved Organic Matter (CDOM), and non-algal particles. Non-algal particles include both inorganic and organic matter. Most of the temporal variability in the diffuse attenuation coefficient of Photosynthetically Available Radiation (PAR) was associated with non-algal particles. However, on a mean daily basis non-algal particles and CDOM contributed a similar fraction (~30 %) to the attenuation of light. The contribution of phytoplankton was about a third of the other two optically important constituents. CDOM concentrations varied with salinity and magnitude of riverine inputs demonstrating its terrestrial origin. Non-algal particle concentration also varied with river flow but also wind driven resuspension. Twelve of the NHEP estuarine assessment zones were observed with the hyperspectral aerial imagery on August 29 and October 17. A concurrent in situ effort included buoy measurements, continuous along-track sampling, discrete water grab samples, and vertical profiles of light attenuation. PAR effective attenuation coefficients retrieved from deep water regions in the imagery agreed well with in-situ observations. Water clarity was lower and optically important constituent concentrations were higher in the tributaries. Eelgrass survival depth, estimated as the depth at which 22% of surface light was available, ranged from less than half a meter to over two meters. The best water clarity was found in the Great Bay (GB), Little Bay (LB), and Lower Piscataqua River (LPR) assessment zones. Absence of eelgrass from these zones would indicate controlling factors other than water clarity

Mapping Chestnut Stands Using Bi-Temporal VHR Data

This study analyzes the potential of very high resolution (VHR) remote sensing images and extended morphological profiles for mapping Chestnut stands on Tenerife Island (Canary Islands, Spain). Regarding their relevance for ecosystem services in the region (cultural and provisioning services) the public sector demand up-to-date information on chestnut and a simple straight-forward approach is presented in this study. We used two VHR WorldView images (March and May 2015) to cover different phenological phases. Moreover, we included spatial information in the classification process by extended morphological profiles (EMPs). Random forest is used for the classification process and we analyzed the impact of the bi-temporal information as well as of the spatial information on the classification accuracies. The detailed accuracy assessment clearly reveals the benefit of bi-temporal VHR WorldView images and spatial information, derived by EMPs, in terms of the mapping accuracy. The bi-temporal classification outperforms or at least performs equally well when compared to the classification accuracies achieved by the mono-temporal data. The inclusion of spatial information by EMPs further increases the classification accuracy by 5% and reduces the quantity and allocation disagreements on the final map. Overall the new proposed classification strategy proves useful for mapping chestnut stands in a heterogeneous and complex landscape, such as the municipality of La Orotava, Tenerife

Seabed mapping in coastal shallow waters using high resolution multispectral and hyperspectral imagery

Coastal ecosystems experience multiple anthropogenic and climate change pressures. To monitor the variability of the benthic habitats in shallow waters, the implementation of effective strategies is required to support coastal planning. In this context, high-resolution remote sensing data can be of fundamental importance to generate precise seabed maps in coastal shallow water areas. In this work, satellite and airborne multispectral and hyperspectral imagery were used to map benthic habitats in a complex ecosystem. In it, submerged green aquatic vegetation meadows have low density, are located at depths up to 20 m, and the sea surface is regularly affected by persistent local winds. A robust mapping methodology has been identified after a comprehensive analysis of different corrections, feature extraction, and classification approaches. In particular, atmospheric, sunglint, and water column corrections were tested. In addition, to increase the mapping accuracy, we assessed the use of derived information from rotation transforms, texture parameters, and abundance maps produced by linear unmixing algorithms. Finally, maximum likelihood (ML), spectral angle mapper (SAM), and support vector machine (SVM) classification algorithms were considered at the pixel and object levels. In summary, a complete processing methodology was implemented, and results demonstrate the better performance of SVM but the higher robustness of ML to the nature of information and the number of bands considered. Hyperspectral data increases the overall accuracy with respect to the multispectral bands (4.7% for ML and 9.5% for SVM) but the inclusion of additional features, in general, did not significantly improve the seabed map quality.Peer ReviewedPostprint (published version

FINE SCALE MAPPING OF LAURENTIAN MIXED FOREST NATURAL HABITAT COMMUNITIES USING MULTISPECTRAL NAIP AND UAV DATASETS COMBINED WITH MACHINE LEARNING METHODS

Natural habitat communities are an important element of any forest ecosystem. Mapping and monitoring Laurentian Mixed Forest natural communities using high spatial resolution imagery is vital for management and conservation purposes. This study developed integrated spatial, spectral and Machine Learning (ML) approaches for mapping complex vegetation communities. The study utilized ultra-high and high spatial resolution National Agriculture Imagery Program (NAIP) and Unmanned Aerial Vehicle (UAV) datasets, and Digital Elevation Model (DEM). Complex natural vegetation community habitats in the Laurentian Mixed Forest of the Upper Midwest. A detailed workflow is presented to effectively process UAV imageries in a dense forest environment where the acquisition of ground control points (GCPs) is extremely difficult. Statistical feature selection methods such as Joint Mutual Information Maximization (JMIM) which is not that widely used in the natural resource field and variable importance (varImp) were used to discriminate spectrally similar habitat communities. A comprehensive approach to training set delineation was implemented including the use of Principal Components Analysis (PCA), Independent Components Analysis (ICA), soils data, and expert image interpretation. The developed approach resulted in robust training sets to delineate and accurately map natural community habitats. Three ML algorithms were implemented Random Forest (RF), Support Vector Machine (SVM), and Averaged Neural Network (avNNet). RF outperformed SVM and avNNet. Overall RF accuracies across the three study sites ranged from 79.45-87.74% for NAIP and 87.31-93.74% for the UAV datasets. Different ancillary datasets including spectral enhancement and image transformation techniques (PCA and ICA), GLCM-Texture, spectral indices, and topography features (elevation, slope, and aspect) were evaluated using the JMIM and varImp feature selection methods, overall accuracy assessment, and kappa calculations. The robustness of the workflow was evaluated with three study sites which are geomorphologically unique and contain different natural habitat communities. This integrated approach is recommended for accurate natural habitat community classification in ecologically complex landscapes