27,766 research outputs found

    Memetic Multilevel Hypergraph Partitioning

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    Hypergraph partitioning has a wide range of important applications such as VLSI design or scientific computing. With focus on solution quality, we develop the first multilevel memetic algorithm to tackle the problem. Key components of our contribution are new effective multilevel recombination and mutation operations that provide a large amount of diversity. We perform a wide range of experiments on a benchmark set containing instances from application areas such VLSI, SAT solving, social networks, and scientific computing. Compared to the state-of-the-art hypergraph partitioning tools hMetis, PaToH, and KaHyPar, our new algorithm computes the best result on almost all instances

    Biology of Applied Digital Ecosystems

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    A primary motivation for our research in Digital Ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex, dynamic problems. However, the biological processes that contribute to these properties have not been made explicit in Digital Ecosystems research. Here, we discuss how biological properties contribute to the self-organising features of biological ecosystems, including population dynamics, evolution, a complex dynamic environment, and spatial distributions for generating local interactions. The potential for exploiting these properties in artificial systems is then considered. We suggest that several key features of biological ecosystems have not been fully explored in existing digital ecosystems, and discuss how mimicking these features may assist in developing robust, scalable self-organising architectures. An example architecture, the Digital Ecosystem, is considered in detail. The Digital Ecosystem is then measured experimentally through simulations, with measures originating from theoretical ecology, to confirm its likeness to a biological ecosystem. Including the responsiveness to requests for applications from the user base, as a measure of the 'ecological succession' (development).Comment: 9 pages, 4 figure, conferenc

    Genetic algorithms with elitism-based immigrants for dynamic shortest path problem in mobile ad hoc networks

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    This article is posted here with permission from the IEEE - Copyright @ 2009 IEEEIn recent years, the static shortest path (SP) problem has been well addressed using intelligent optimization techniques, e.g., artificial neural networks (ANNs), genetic algorithms (GAs), particle swarm optimization (PSO), etc. However, with the advancement in wireless communications, more and more mobile wireless networks appear, e.g., mobile ad hoc network (MANET), wireless sensor network (WSN), etc. One of the most important characteristics in mobile wireless networks is the topology dynamics, that is, the network topology changes over time due to energy conservation or node mobility. Therefore, the SP problem turns out to be a dynamic optimization problem (DOP) in MANETs. In this paper, we propose to use elitism-based immigrants GA (EIGA) to solve the dynamic SP problem in MANETs. We consider MANETs as target systems because they represent new generation wireless networks. The experimental results show that the EIGA can quickly adapt to the environmental changes (i.e., the network topology change) and produce good solutions after each change.This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) of UK under Grant EP/E060722/1

    Evolutionary Synthesis of Cube Root Computational Circuit Using Graph Hybrid Estimation of Distribution Algorithm

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    The paper is focused on evolutionary synthesis of analog circuit realization of cube root function using proposed Graph Hybrid Estimation of Distribution Algorithm. The problem of cube root function circuit realization was adopted to demonstrate synthesis capability of the proposed method. Individuals of the population of the proposed method which represent promising topologies are encoded using graphs and hypergraphs. Hybridization with local search algorithm was used. The proposed method employs univariate probabilistic model

    Evolutionary Multi-Objective Design of SARS-CoV-2 Protease Inhibitor Candidates

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    Computational drug design based on artificial intelligence is an emerging research area. At the time of writing this paper, the world suffers from an outbreak of the coronavirus SARS-CoV-2. A promising way to stop the virus replication is via protease inhibition. We propose an evolutionary multi-objective algorithm (EMOA) to design potential protease inhibitors for SARS-CoV-2's main protease. Based on the SELFIES representation the EMOA maximizes the binding of candidate ligands to the protein using the docking tool QuickVina 2, while at the same time taking into account further objectives like drug-likeliness or the fulfillment of filter constraints. The experimental part analyzes the evolutionary process and discusses the inhibitor candidates.Comment: 15 pages, 7 figures, submitted to PPSN 202

    The True Destination of EGO is Multi-local Optimization

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    Efficient global optimization is a popular algorithm for the optimization of expensive multimodal black-box functions. One important reason for its popularity is its theoretical foundation of global convergence. However, as the budgets in expensive optimization are very small, the asymptotic properties only play a minor role and the algorithm sometimes comes off badly in experimental comparisons. Many alternative variants have therefore been proposed over the years. In this work, we show experimentally that the algorithm instead has its strength in a setting where multiple optima are to be identified
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