10,523 research outputs found
Projected Power Iteration for Network Alignment
The network alignment problem asks for the best correspondence between two
given graphs, so that the largest possible number of edges are matched. This
problem appears in many scientific problems (like the study of protein-protein
interactions) and it is very closely related to the quadratic assignment
problem which has graph isomorphism, traveling salesman and minimum bisection
problems as particular cases. The graph matching problem is NP-hard in general.
However, under some restrictive models for the graphs, algorithms can
approximate the alignment efficiently. In that spirit the recent work by Feizi
and collaborators introduce EigenAlign, a fast spectral method with convergence
guarantees for Erd\H{o}s-Reny\'i graphs. In this work we propose the algorithm
Projected Power Alignment, which is a projected power iteration version of
EigenAlign. We numerically show it improves the recovery rates of EigenAlign
and we describe the theory that may be used to provide performance guarantees
for Projected Power Alignment.Comment: 8 page
Faster Algorithms for the Maximum Common Subtree Isomorphism Problem
The maximum common subtree isomorphism problem asks for the largest possible
isomorphism between subtrees of two given input trees. This problem is a
natural restriction of the maximum common subgraph problem, which is -hard in general graphs. Confining to trees renders polynomial time
algorithms possible and is of fundamental importance for approaches on more
general graph classes. Various variants of this problem in trees have been
intensively studied. We consider the general case, where trees are neither
rooted nor ordered and the isomorphism is maximum w.r.t. a weight function on
the mapped vertices and edges. For trees of order and maximum degree
our algorithm achieves a running time of by
exploiting the structure of the matching instances arising as subproblems. Thus
our algorithm outperforms the best previously known approaches. No faster
algorithm is possible for trees of bounded degree and for trees of unbounded
degree we show that a further reduction of the running time would directly
improve the best known approach to the assignment problem. Combining a
polynomial-delay algorithm for the enumeration of all maximum common subtree
isomorphisms with central ideas of our new algorithm leads to an improvement of
its running time from to ,
where is the order of the larger tree, is the number of different
solutions, and is the minimum of the maximum degrees of the input
trees. Our theoretical results are supplemented by an experimental evaluation
on synthetic and real-world instances
Seeded Graph Matching: Efficient Algorithms and Theoretical Guarantees
In this paper, a new information theoretic framework for graph matching is
introduced. Using this framework, the graph isomorphism and seeded graph
matching problems are studied. The maximum degree algorithm for graph
isomorphism is analyzed and sufficient conditions for successful matching are
rederived using type analysis. Furthermore, a new seeded matching algorithm
with polynomial time complexity is introduced. The algorithm uses `typicality
matching' and techniques from point-to-point communications for reliable
matching. Assuming an Erdos-Renyi model on the correlated graph pair, it is
shown that successful matching is guaranteed when the number of seeds grows
logarithmically with the number of vertices in the graphs. The logarithmic
coefficient is shown to be inversely proportional to the mutual information
between the edge variables in the two graphs
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