A Computationally Efficient Projection-Based Approach for Spatial Generalized Linear Mixed Models

Inference for spatial generalized linear mixed models (SGLMMs) for high-dimensional non-Gaussian spatial data is computationally intensive. The computational challenge is due to the high-dimensional random effects and because Markov chain Monte Carlo (MCMC) algorithms for these models tend to be slow mixing. Moreover, spatial confounding inflates the variance of fixed effect (regression coefficient) estimates. Our approach addresses both the computational and confounding issues by replacing the high-dimensional spatial random effects with a reduced-dimensional representation based on random projections. Standard MCMC algorithms mix well and the reduced-dimensional setting speeds up computations per iteration. We show, via simulated examples, that Bayesian inference for this reduced-dimensional approach works well both in terms of inference as well as prediction, our methods also compare favorably to existing "reduced-rank" approaches. We also apply our methods to two real world data examples, one on bird count data and the other classifying rock types

Gaussian Process Morphable Models

Statistical shape models (SSMs) represent a class of shapes as a normal distribution of point variations, whose parameters are estimated from example shapes. Principal component analysis (PCA) is applied to obtain a low-dimensional representation of the shape variation in terms of the leading principal components. In this paper, we propose a generalization of SSMs, called Gaussian Process Morphable Models (GPMMs). We model the shape variations with a Gaussian process, which we represent using the leading components of its Karhunen-Loeve expansion. To compute the expansion, we make use of an approximation scheme based on the Nystrom method. The resulting model can be seen as a continuous analogon of an SSM. However, while for SSMs the shape variation is restricted to the span of the example data, with GPMMs we can define the shape variation using any Gaussian process. For example, we can build shape models that correspond to classical spline models, and thus do not require any example data. Furthermore, Gaussian processes make it possible to combine different models. For example, an SSM can be extended with a spline model, to obtain a model that incorporates learned shape characteristics, but is flexible enough to explain shapes that cannot be represented by the SSM. We introduce a simple algorithm for fitting a GPMM to a surface or image. This results in a non-rigid registration approach, whose regularization properties are defined by a GPMM. We show how we can obtain different registration schemes,including methods for multi-scale, spatially-varying or hybrid registration, by constructing an appropriate GPMM. As our approach strictly separates modelling from the fitting process, this is all achieved without changes to the fitting algorithm. We show the applicability and versatility of GPMMs on a clinical use case, where the goal is the model-based segmentation of 3D forearm images

Topics in High-Dimensional Statistics and the Analysis of Large Hyperspectral Images.

Advancement in imaging technology has made hyperspectral images gathered from remote sensing much more common. The high-dimensional nature of these large scale data coupled with wavelength and spatial dependency necessitates high-dimensional and efficient computation methods to address these issues while producing results that are concise and easy to understand. The thesis addresses these issues by examining high-dimensional methods in the context of hyperspectral image classification, unmixing and wavelength correlation estimation. Chapter 2 re-examines the sparse Bayesian learning (SBL) of linear models in a high-dimensional setting with sparse signal. The hard-thresholded version of the SBL estimator, under orthogonal design, achieves non-asymptotic error rate that is comparable to LASSO. We also establish in the chapter that with high-probability the estimator recovers the sparsity structure of the signal. The ability to recover sparsity structures in high dimensional settings is crucial for unmixing with high-dimensional libraries in the next chapter. In Chapter 3, the thesis investigates the application of SBL on the task of linear/bilinear unmixing and classification of hyperspectral images. The proposed model in this chapter uses latent Markov random fields to classify pixels and account for the spatial dependence between pixels. In the proposed model, the pixels belonging to the same group share the same mixture of pure endmembers. The task of unmixing and classification are performed simultaneously, but this method does not address wavelength dependence. Chapter 4 is a natural extension of the previous chapter that contains the framework to account for both spatial and wavelength dependence in the unmixing of hyperspectral images. The classification of the images are performed using approximate spectral clustering while the unmixing task is performed in tandem with sparse wavelength concentration matrix estimation.PHDStatisticsUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/135893/1/chye_1.pd

A Tensor Approach to Learning Mixed Membership Community Models

Community detection is the task of detecting hidden communities from observed interactions. Guaranteed community detection has so far been mostly limited to models with non-overlapping communities such as the stochastic block model. In this paper, we remove this restriction, and provide guaranteed community detection for a family of probabilistic network models with overlapping communities, termed as the mixed membership Dirichlet model, first introduced by Airoldi et al. This model allows for nodes to have fractional memberships in multiple communities and assumes that the community memberships are drawn from a Dirichlet distribution. Moreover, it contains the stochastic block model as a special case. We propose a unified approach to learning these models via a tensor spectral decomposition method. Our estimator is based on low-order moment tensor of the observed network, consisting of 3-star counts. Our learning method is fast and is based on simple linear algebraic operations, e.g. singular value decomposition and tensor power iterations. We provide guaranteed recovery of community memberships and model parameters and present a careful finite sample analysis of our learning method. As an important special case, our results match the best known scaling requirements for the (homogeneous) stochastic block model