Meshfree and Particle Methods in Biomechanics: Prospects and Challenges

The use of meshfree and particle methods in the field of bioengineering and biomechanics has significantly increased. This may be attributed to their unique abilities to overcome most of the inherent limitations of mesh-based methods in dealing with problems involving large deformation and complex geometry that are common in bioengineering and computational biomechanics in particular. This review article is intended to identify, highlight and summarize research works on topics that are of substantial interest in the field of computational biomechanics in which meshfree or particle methods have been employed for analysis, simulation or/and modeling of biological systems such as soft matters, cells, biological soft and hard tissues and organs. We also anticipate that this review will serve as a useful resource and guide to researchers who intend to extend their work into these research areas. This review article includes 333 references

Development of Gradient Smoothing Operations and Application to Biological Systems

Ph.DDOCTOR OF PHILOSOPH

Smoothed Particle Hydrodynamics for Computational Fluid Dynamics

Smoothed particle hydrodynamics (SPH) is a simple and effective numerical method that can be used to solve a variety of challenging problems in computational mechanics. It is a Lagrangian mesh-free method ideal for solving deformation problems. In the SPH method, the state of a system is represented by a set of particles, which possesses individual material properties and interact with each other within a specific range defined as a support domain by a weight function or smoothing function. SPH features flexibility in handling complex flow fields and in including physical effects. In theory, the basic concept of the SPH method is introduced in this paper. Some detailed numerical aspects are discussed including the kernel approximation in continuous form and particle approximation in discrete form, the properties for the smoothing functions and some of the most frequently used ones in the SPH literature, the concept of support and interface domain, SPH formulations for Navier-Stokes equation, time integration, boundary treatment, particle interaction, artificial viscosity, laminar viscosity, shifting algorithm, and so on. In applications, this paper presents an improved SPH method for modeling the diffusion process of a microneedle and using smoothed particle hydrodynamics (SPH) method to simulate the 25% cross-section stenosis blood vessel model and the 75% crosssection stenosis blood vessel model. The obtained numerical results are in close agreement with available theoretical and experimental results in the literature. As an emerging transdermal drug delivery device, microneedles demonstrate some superior potential and advantages over traditional metallic needles-on-syringes in skin injection and vaccine [1]. However, very few research papers are available. This project uses a high order continuous method, the spectral element method (SEM), and a low order discrete method, the Smoothed Particle Hydrodynamics (SPH), to investigate this new drug delivery system. The incompressible Navier-Stokes equations were solved with SEM under appropriate initial and slip boundary conditions for the transport of medicine inside microneedles of rectangular and circular cross-sections. In addition, Darcy-Brinkman equations and a concentration equation were solved with SEM under appropriate initial and boundary conditions for the infiltration of medicine solution through porous media of the dermis tissue once a microneedle enters the skin. Meanwhile, the Lagrangian form of the Navier-Stokes equations were solved with the weighted interpolation approach via numerical integrations without inverting any matrices. Results from the mesh-based SEM and the mesh-free SPH simulations revealed technical details about the processes of delivery of medicine particles through microneedles and diffusion in the skin tissue, and the medicine concentration changes with space and time. The overall effect of medicine delivery under initial concentration and conditions were simulated and the effect of drug delivery were assessed. The formation of thrombus is a complicated process. The existing literature rarely has a model for high-fidelity simulation of the effects and hazards of blood clots on blood flow. In this model, high-fidelity simulations are performed for complex human internal environments. The result of this simulation indicates high pressure area in blood vessel wall which matches the real condition of the vessel experiment

Investigation of bubble dynamics and heating during focused ultrasound insonation in tissue-mimicking materials

The deposition of ultrasonic energy in tissue can cause tissue damage due to local heating. For pressures above a critical threshold, cavitation will occur in tissue and bubbles will be created. These oscillating bubbles can induce a much larger thermal energy deposition in the local region. Traditionally, clinicians and researchers have not exploited this bubble-enhanced heating since cavitation behavior is erratic and very difficult to control. The present work is an attempt to control and utilize this bubble-enhanced heating. First, by applying appropriate bubble dynamic models, limits on the asymptotic bubble size distribution are obtained for different driving pressures at 1 MHz. The size distributions are bounded by two thresholds: the bubble shape instability threshold and the rectified diffusion threshold. The growth rate of bubbles in this region is also given, and the resulting time evolution of the heating in a given insonation scenario is modeled. In addition, some experimental results have been obtained to investigate the bubble-enhanced heating in an agar and graphite based tissue- mimicking material. Heating as a function of dissolved gas concentrations in the tissue phantom is investigated. Bubble-based contrast agents are introduced to investigate the effect on the bubble-enhanced heating, and to control the initial bubble size distribution. The mechanisms of cavitation-related bubble heating are investigated, and a heating model is established using our understanding of the bubble dynamics. By fitting appropriate bubble densities in the ultrasound field, the peak temperature changes are simulated. The results for required bubble density are given. Finally, a simple bubbly liquid model is presented to estimate the shielding effects which may be important even for low void fraction during high intensity focused ultrasound (HIFU) treatment

Heat Transfer

Over the past few decades there has been a prolific increase in research and development in area of heat transfer, heat exchangers and their associated technologies. This book is a collection of current research in the above mentioned areas and describes modelling, numerical methods, simulation and information technology with modern ideas and methods to analyse and enhance heat transfer for single and multiphase systems. The topics considered include various basic concepts of heat transfer, the fundamental modes of heat transfer (namely conduction, convection and radiation), thermophysical properties, computational methodologies, control, stabilization and optimization problems, condensation, boiling and freezing, with many real-world problems and important modern applications. The book is divided in four sections : "Inverse, Stabilization and Optimization Problems", "Numerical Methods and Calculations", "Heat Transfer in Mini/Micro Systems", "Energy Transfer and Solid Materials", and each section discusses various issues, methods and applications in accordance with the subjects. The combination of fundamental approach with many important practical applications of current interest will make this book of interest to researchers, scientists, engineers and graduate students in many disciplines, who make use of mathematical modelling, inverse problems, implementation of recently developed numerical methods in this multidisciplinary field as well as to experimental and theoretical researchers in the field of heat and mass transfer

Book of Abstracts 15th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering and 3rd Conference on Imaging and Visualization

In this edition, the two events will run together as a single conference, highlighting the strong connection with the Taylor & Francis journals: Computer Methods in Biomechanics and Biomedical Engineering (John Middleton and Christopher Jacobs, Eds.) and Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization (JoãoManuel R.S. Tavares, Ed.). The conference has become a major international meeting on computational biomechanics, imaging andvisualization. In this edition, the main program includes 212 presentations. In addition, sixteen renowned researchers will give plenary keynotes, addressing current challenges in computational biomechanics and biomedical imaging. In Lisbon, for the first time, a session dedicated to award the winner of the Best Paper in CMBBE Journal will take place. We believe that CMBBE2018 will have a strong impact on the development of computational biomechanics and biomedical imaging and visualization, identifying emerging areas of research and promoting the collaboration and networking between participants. This impact is evidenced through the well-known research groups, commercial companies and scientific organizations, who continue to support and sponsor the CMBBE meeting series. In fact, the conference is enriched with five workshops on specific scientific topics and commercial software.info:eu-repo/semantics/draf

Nonlinear Acoustic Waves in Complex Media

[EN] Nature is nonlinear. The linear description of physical phenomena is useful for explain observations with the simplest mathematical models, but they are only accurate for a limited range of input values. In the case of intense acoustics waves, linear models obviate a wide range of physical phenomena that are necessary for accurately describe such high-amplitude waves, indispensable for explain other exotic acoustic waves and mandatory for developing new applied techniques based on nonlinear processes. In this Thesis we study the interactions between nonlinearity and other basic wave phenomena such as non-classical attenuation, anisotropic dispersion and periodicity, and diffraction in specific configurations. First, we present intense strain waves in a chain of cations coupled by realistic interatomic potentials. Here, the nonlinear ionic interactions and lattice dispersion lead to the formation of supersonic kinks. These intrinsically-nonlinear localized dislocations travel long distances without changing its properties and explain the formation of dark traces in mica crystals. Then, we analyze nonlinear wave processes in a system composed of multilayered acoustic media. The rich nonlinear dynamics of this system is characterized by its strong dispersion. Here, harmonic generation processes and the relation with its band structure are presented, showing that the nonlinear processes can be enhanced, strongly minimized or simply modified by tuning the layer parameters. In this way, we show how the dynamics of intense monochromatic waves and acoustic solitons can be controlled by artificial layered materials. In a second part, we include diffraction and analyze four types of singular beams. First, we study nonlinear beams in two dimensional sonic crystals. In this system, the inclusion of anisotropic dispersion is tuned for obtain simultaneous self-collimation for fundamental and second harmonic beams. The conditions for optimal second harmonic generation are presented. Secondly, we present limited diffraction beam generation using equispaced axisymmetric diffraction gratings. The obtained beams are truncated version of zero-th order Bessel beams. Third, the grating spacing can be modified to achieve focusing, where the generated nonlinear beams presents high gain, around 30 dB, with a focal width which is between the diffraction limit and the sub-wavelength regime, but with its characteristic high amplitude side lobes strongly reduced. Finally, we observe that waves diffracted by spiral-shaped gratings generate high-order Bessel beams, conforming nonlinear acoustic vortex. The conditions to obtain arbitrary-order Bessel beams by these passive elements are presented. Finally, the interplay of nonlinearity and attenuation in biological media is studied in the context of medical ultrasound. First, a numerical method is developed. The method solves the constitutive relations for nonlinear acoustics and the frequency power law attenuation of biological media is modeled as a sum of relaxation processes. A new technique for reducing numerical dispersion based on artificial relaxation is included. Second, this method is used to study the harmonic balance as a function of the power law, showing the role of weak dispersion and its impact on the efficiency of the harmonic generation in soft-tissues. Finally, the study concerns the nonlinear behavior of acoustic radiation forces in frequency power law attenuation media. We present how the interplay between nonlinearity and the specific frequency power law of biological media can modify the value for acoustic radiation forces. The relation of the nonlinear acoustic radiation force with thermal effects are also discussed. The broad range of nonlinear processes analyzed in this Thesis contributes to understanding the behavior of intense acoustic waves traveling trough complex media, while its implications for enhancing existent applied acoustics techniques are presented.[ES] La Naturaleza es no lineal. La descripción lineal de los fenómenos físicos es de gran utilidad para explicar nuestras observaciones con modelos matemáticos simples, pero éstos sólo son precisos en un limitado rango de validez. En el caso de onda acústica de alta intensidad, los modelos lineales obvian un amplio rango de fenómenos físicos que son necesarios para describir con precisión las ondas de gran amplitud, pero además son necesarios para explicar otros procesos más exóticos e indispensables para desarrollar nuevas aplicaciones basadas en propagación no lineal. En esta Tesis, estudiamos las interacciones entre no linealidad y otros procesos complejos como atenuación no-clásica, dispersión anisotrópica y periodicidad, y difracción en configuraciones específicas. En primer lugar, presentamos ondas de deformación en una cadena de cationes acoplados por potenciales realísticas. Aquí, las interacciones no lineales entre iones, producen la conformación de kinks supersónicos. Estas dislocaciones localizadas intrínsecamente no lineales viajan por la red largas distancias sin variar sus propiedades, y pueden explicar la formación de trazas en minerales como la mica. Aumentando la escala del problema, estudiamos los procesos acústicos no lineales en medios multicapa. La rica dinámica de estos medios está caracterizada por la fuerte dispersión debido a la periodicidad del sistema. Aquí, estudiamos los procesos de generación de harmónicos, mostrando como modificando la estructura podemos potenciar, minimizar, o simplemente modificar artificialmente la transferencia de energía entre las componentes espectrales, y de esta manera controlar la dinámica de las ondas y solitones en el interior de la estructura. En la segunda parte, incluimos difracción y analizamos cuatro tipos de haces singulares. En primer lugar, analizamos haces ultrasónicos no lineales en cristales de sonido bidimensionales. En este sistema, las propiedades de anisotropía del medio son ajustadas para obtener la auto-colimación simultánea del primer y segundo harmónico. Así, se obtiene la propagación no difractiva para las dos componentes. En segundo lugar, presentamos haces de difracción limitada empleando rejillas de difracción axisimétricas. Por último, demostramos la generación de haces de Bessel de orden superior mediante estructuras en espiral. En la última parte, estudiamos la competición entre no linealidad y la atenuación y dispersión observable en medios biológicos en el contexto de las aplicaciones de biomédicas de los ultrasonidos. En primer lugar desarrollamos un nuevo método computacional para la dependencia frecuencial en forma de ley de potencia de la absorción característica de los tejidos. Este método en dominio temporal es usado posteriormente para revisar los procesos básicos no lineales prestando especial interés en el paper de la dispersión del tejido. Por último, la resolución de las ecuaciones constitutivas nos permite abordar la descripción no lineal de la fuerza de radiación acústica producida en tejidos biológicos, y las implicaciones existentes con la deposición de energía y transferencia de momento para ondas ultrasónicas de alta intensidad. El amplio abanico de procesos no lineales analizados en esta tesis contribuye a una mejor comprensión de la dinámica de las ondas acústicas de alta intensidad en medios complejos, donde las implicaciones existentes en cuanto a la mejora de sus aplicaciones prácticas son puestas de manifiesto.[CA] La Naturalesa és no lineal. La descripció lineal dels fenòmens físics és de gran utilitat per a explicar les nostres observacions amb models matemàtics simples, però aquests sol són precisos en un limitat rang de validesa. En el cas d'ona acústica d'alta intensitat, els models lineals obvien un ampli rang de fenòmens físics que són necessaris per a descriure amb precisió les ones de gran amplitud, però a més són necessaris per a explicar altres processos més exòtics i indispensables per a desenvolupar noves aplicacions basades en propagació no lineal. En aquesta Tesi, estudiem les interaccions entre no-linealitat i altres processos complexos com atenuació no-clàssica, dispersió anisotròpica i periodicitat, i difracció en configuracions específiques. En primer lloc, presentem ones de deformació en una cadena de cations acoblats per potencials realistes. Ací, les interaccions no lineals entre ions, produeixen la conformació de kinks supersònics. Aquestes dislocacions localitzades intrínsecament no lineals viatgen per la xarxa llargues distàncies sense variar les seues propietats, i poden explicar la formació de traces en minerals com la mica. Augmentant l'escala del problema, estudiem els processos acústics no lineals en mitjans multicapa. La rica dinàmica d'aquests mitjans es caracteritza per la forta dispersió a causa de la periodicitat del sistema. Ací, estudiem els processos de generació d'harmònics, mostrant com modificant l'estructura podem potenciar, minimitzar, o simplement modificar artificialment la transferència d'energia entre les components espectrals, i d'aquesta manera controlar la dinàmica de les ones i solitons a l'interior de l'estructura. En la segona part, incloem difracció i analitzem quatre tipus de feixos singulars. En primer lloc, analitzem feixos ultrasònics no lineals en cristalls de so bidimensionals. En aquest sistema, les propietats d'anisotropia del medi són ajustades per a obtenir l'acte-col·limació simultània del primer i segon harmònic. Així, s'obté la propagació no difractiva per a les dues components. En segon lloc, presentem feixos de difracció limitada emprant reixetes de difracció axisimètriques. Per últim, vam demostrar la generació de feixos de Bessel d'ordre superior mitjançant estructures en espiral. En l'última part, estudiem la competició entre no linealitat i l'atenuació i dispersió observable en medis biològics en el context de les aplicacions biomèdiques dels ultrasons. En primer lloc desenvolupem un nou mètode computacional per a la dependència freqüencial en forma de llei de potència de l'absorció característica dels teixits biològics. Aquest mètode en domini temporal és usat posteriorment per a revisar els processos bàsics no lineals prestant especial interés en el paper de la dispersió del teixit. Per últim, la resolució de les equacions constitutives ens permet abordar la descripció no lineal de la força de radiació acústica produïda en teixits biològics, i les implicacions existents amb la deposició d'energia i transferència de moment per a ones ultrasòniques d'alta intensitat. L'ampli ventall de processos no lineals analitzats en aquesta tesi contribueix a una millor comprensió de la dinàmica de les ones acústiques d'alta intensitat en medis complexos, on les implicacions existents quant a la millora de les seues aplicacions practiques són posades de manifest.Jiménez González, N. (2015). Nonlinear Acoustic Waves in Complex Media [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/53237TESISPremios Extraordinarios de tesis doctorale

Proceedings of the 2018 Canadian Society for Mechanical Engineering (CSME) International Congress

Published proceedings of the 2018 Canadian Society for Mechanical Engineering (CSME) International Congress, hosted by York University, 27-30 May 2018