Enhanced iris recognition: Algorithms for segmentation, matching and synthesis

This thesis addresses the issues of segmentation, matching, fusion and synthesis in the context of irises and makes a four-fold contribution. The first contribution of this thesis is a post matching algorithm that observes the structure of the differences in feature templates to enhance recognition accuracy. The significance of the scheme is its robustness to inaccuracies in the iris segmentation process. Experimental results on the CASIA database indicate the efficacy of the proposed technique. The second contribution of this thesis is a novel iris segmentation scheme that employs Geodesic Active Contours to extract the iris from the surrounding structures. The proposed scheme elicits the iris texture in an iterative fashion depending upon both the local and global conditions of the image. The performance of an iris recognition algorithm on both the WVU non-ideal and CASIA iris database is observed to improve upon application of the proposed segmentation algorithm. The third contribution of this thesis is the fusion of multiple instances of the same iris and multiple iris units of the eye, i.e., the left and right iris at the match score level. Using simple sum rule, it is demonstrated that both multi-instance and multi-unit fusion of iris can lead to a significant improvement in matching accuracy. The final contribution is a technique to create a large database of digital renditions of iris images that can be used to evaluate the performance of iris recognition algorithms. This scheme is implemented in two stages. In the first stage, a Markov Random Field model is used to generate a background texture representing the global iris appearance. In the next stage a variety of iris features, viz., radial and concentric furrows, collarette and crypts, are generated and embedded in the texture field. Experimental results confirm the validity of the synthetic irises generated using this technique

Advanced image processing techniques for detection and quantification of drusen

Dissertation presented to obtain the degree of Doctor of Philosophy in Electrical Engineering, speciality on Perceptional Systems, by the Universidade Nova de Lisboa, Faculty of Sciences and TechnologyDrusen are common features in the ageing macula, caused by accumulation of extracellular materials beneath the retinal surface, visible in retinal fundus images as yellow spots. In the ophthalmologists’ opinion, the evaluation of the total drusen area, in a sequence of images taken during a treatment, will help to understand the disease progression and effectiveness. However, this evaluation is fastidious and difficult to reproduce when performed manually. A literature review on automated drusen detection showed that the works already published were limited to techniques of either adaptive or global thresholds which showed a tendency to produce a significant number of false positives. The purpose for this work was to propose an alternative method to automatically quantify drusen using advanced digital image processing techniques. This methodology is based on a detection and modelling algorithm to automatically quantify drusen. It includes an image pre-processing step to correct the uneven illumination by using smoothing splines fitting and to normalize the contrast. To quantify drusen a detection and modelling algorithm is adopted. The detection uses a new gradient based segmentation algorithm that isolates drusen and provides basic drusen characterization to the modelling stage. These are then fitted by Gaussian functions, to produce a model of the image, which is used to compute the affected areas. To validate the methodology, two software applications, one for semi-automated (MD3RI) and other for automated detection of drusen (AD3RI), were implemented. The first was developed for Ophthalmologists to manually analyse and mark drusen deposits, while the other implemented algorithms for automatic drusen quantification.Four studies to assess the methodology accuracy involving twelve specialists have taken place. These compared the automated method to the specialists and evaluated its repeatability. The studies were analysed regarding several indicators, which were based on the total affected area and on a pixel-to-pixel analysis. Due to the high variability among the graders involved in the first study, a new evaluation method, the Weighed Matching Analysis, was developed to improve the pixel-to-pixel analysis by using the statistical significance of the observations to differentiate positive and negative pixels. From the results of these studies it was concluded that the methodology proposed is capable to automatically measure drusen in an accurate and reproducible process. Also, the thesis proposes new image processing algorithms, for image pre-processing, image segmentation,image modelling and images comparison, which are also applicable to other image processing fields

Methods for iris classification and macro feature detection

This work deals with two distinct aspects of iris-based biometric systems: iris classification and macro-feature detection. Iris classification will benefit identification systems where the query image has to be compared against all identities in the database. By preclassifying the query image based on its texture, this comparison is executed only against those irises that are from the same class as the query image. In the proposed classification method, the normalized iris is tessellated into overlapping rectangular blocks and textural features are extracted from each block. A clustering scheme is used to generate multiple classes of irises based on the extracted features. A minimum distance classifier is then used to assign the query iris to a particular class. The use of multiple blocks with decision level fusion in the classification process is observed to enhance the accuracy of the method.;Most iris-based systems use the global and local texture information of the iris to perform matching. In order to exploit the anatomical structures within the iris during the matching stage, two methods to detect the macro-features of the iris in multi-spectral images are proposed. These macro-features typically correspond to anomalies in pigmentation and structure within the iris. The first method uses the edge-flow technique to localize these features. The second technique uses the SIFT (Scale Invariant Feature Transform) operator to detect discontinuities in the image. Preliminary results show that detection of these macro features is a difficult problem owing to the richness and variability in iris color and texture. Thus a large number of spurious features are detected by both the methods suggesting the need for designing more sophisticated algorithms. However the ability of the SIFT operator to match partial iris images is demonstrated thereby indicating the potential of this scheme to be used for macro-feature detection

Multibiometric System Combining Iris and Retina

Tato diplomová práce se zabývá multibiometrickými systémy, specificky potom biometrickou fúzí. Práce popisuje biometrii oka, tedy rozpoznávání na základě sítnice a duhovky. Stěžejní část tvoří návrh a implementace biometrického systému, který je založený na rozpoznání sítnice a duhovky.This diploma thesis focuses on multibiometric systems, specifically on biometric fusion. The thesis describes eye biometrics, i.e. recognition based on retina and iris. The key part consists of design and implementation specification of a biometric system based on retina and iris recognition.

Visionary Ophthalmics: Confluence of Computer Vision and Deep Learning for Ophthalmology

Ophthalmology is a medical field ripe with opportunities for meaningful application of computer vision algorithms. The field utilizes data from multiple disparate imaging techniques, ranging from conventional cameras to tomography, comprising a diverse set of computer vision challenges. Computer vision has a rich history of techniques that can adequately meet many of these challenges. However, the field has undergone something of a revolution in recent times as deep learning techniques have sprung into the forefront following advances in GPU hardware. This development raises important questions regarding how to best leverage insights from both modern deep learning approaches and more classical computer vision approaches for a given problem. In this dissertation, we tackle challenging computer vision problems in ophthalmology using methods all across this spectrum. Perhaps our most significant work is a highly successful iris registration algorithm for use in laser eye surgery. This algorithm relies on matching features extracted from the structure tensor and a Gabor wavelet – a classically driven approach that does not utilize modern machine learning. However, drawing on insight from the deep learning revolution, we demonstrate successful application of backpropagation to optimize the registration significantly faster than the alternative of relying on finite differences. Towards the other end of the spectrum, we also present a novel framework for improving RANSAC segmentation algorithms by utilizing a convolutional neural network (CNN) trained on a RANSAC-based loss function. Finally, we apply state-of-the-art deep learning methods to solve the problem of pathological fluid detection in optical coherence tomography images of the human retina, using a novel retina-specific data augmentation technique to greatly expand the data set. Altogether, our work demonstrates benefits of applying a holistic view of computer vision, which leverages deep learning and associated insights without neglecting techniques and insights from the previous era

Level set segmentation of retinal structures

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University London.Changes in retinal structure are related to different eye diseases. Various retinal imaging techniques, such as fundus imaging and optical coherence tomography (OCT) imaging modalities, have been developed for non-intrusive ophthalmology diagnoses according to the vasculature changes. However, it is time consuming or even impossible for ophthalmologists to manually label all the retinal structures from fundus images and OCT images. Therefore, computer aided diagnosis system for retinal imaging plays an important role in the assessment of ophthalmologic diseases and cardiovascular disorders. The aim of this PhD thesis is to develop segmentation methods to extract clinically useful information from these retinal images, which are acquired from different imaging modalities. In other words, we built the segmentation methods to extract important structures from both 2D fundus images and 3D OCT images. In the first part of my PhD project, two novel level set based methods were proposed for detecting the blood vessels and optic discs from fundus images. The first one integrates Chan-Vese's energy minimizing active contour method with the edge constraint term and Gaussian Mixture Model based term for blood vessels segmentation, while the second method combines the edge constraint term, the distance regularisation term and the shape-prior term for locating the optic disc. Both methods include the pre-processing stage, used for removing noise and enhancing the contrast between the object and the background. Three automated layer segmentation methods were built for segmenting intra-retinal layers from 3D OCT macular and optic nerve head images in the second part of my PhD project. The first two methods combine different methods according to the data characteristics. First, eight boundaries of the intra-retinal layers were detected from the 3D OCT macular images and the thickness maps of the seven layers were produced. Second, four boundaries of the intra-retinal layers were located from 3D optic nerve head images and the thickness maps of the Retinal Nerve Fiber Layer (RNFL) were plotted. Finally, the choroidal layer segmentation method based on the Level Set framework was designed, which embedded with the distance regularisation term, edge constraint term and Markov Random Field modelled region term. The thickness map of the choroidal layer was calculated and shown.Department of Computer Science, Brunel University London

Advancing iris biometric technology

PhD ThesisThe iris biometric is a well-established technology which is already in use in several nation-scale applications and it is still an active research area with several unsolved problems. This work focuses on three key problems in iris biometrics namely: segmentation, protection and cross-matching. Three novel methods in each of these areas are proposed and analyzed thoroughly. In terms of iris segmentation, a novel iris segmentation method is designed based on a fusion of an expanding and a shrinking active contour by integrating a new pressure force within the Gradient Vector Flow (GVF) active contour model. In addition, a new method for closed eye detection is proposed. The experimental results on the CASIA V4, MMU2, UBIRIS V1 and UBIRIS V2 databases show that the proposed method achieves state-of-theart results in terms of segmentation accuracy and recognition performance while being computationally more efficient. In this context, improvements by 60.5%, 42% and 48.7% are achieved in segmentation accuracy for the CASIA V4, MMU2 and UBIRIS V1 databases, respectively. For the UBIRIS V2 database, a superior time reduction is reported (85.7%) while maintaining a similar accuracy. Similarly, considerable time improvements by 63.8%, 56.6% and 29.3% are achieved for the CASIA V4, MMU2 and UBIRIS V1 databases, respectively. With respect to iris biometric protection, a novel security architecture is designed to protect the integrity of iris images and templates using watermarking and Visual Cryptography (VC). Firstly, for protecting the iris image, text which carries personal information is embedded in the middle band frequency region of the iris image using a novel watermarking algorithm that randomly interchanges multiple middle band pairs of the Discrete Cosine Transform (DCT). Secondly, for iris template protection, VC is utilized to protect the iii iris template. In addition, the integrity of the stored template in the biometric smart card is guaranteed by using the hash signatures. The proposed method has a minimal effect on the iris recognition performance of only 3.6% and 4.9% for the CASIA V4 and UBIRIS V1 databases, respectively. In addition, the VC scheme is designed to be readily applied to protect any biometric binary template without any degradation to the recognition performance with a complexity of only O(N). As for cross-spectral matching, a framework is designed which is capable of matching iris images in different lighting conditions. The first method is designed to work with registered iris images where the key idea is to synthesize the corresponding Near Infra-Red (NIR) images from the Visible Light (VL) images using an Artificial Neural Network (ANN) while the second method is capable of working with unregistered iris images based on integrating the Gabor filter with different photometric normalization models and descriptors along with decision level fusion to achieve the cross-spectral matching. A significant improvement by 79.3% in cross-spectral matching performance is attained for the UTIRIS database. As for the PolyU database, the proposed verification method achieved an improvement by 83.9% in terms of NIR vs Red channel matching which confirms the efficiency of the proposed method. In summary, the most important open issues in exploiting the iris biometric are presented and novel methods to address these problems are proposed. Hence, this work will help to establish a more robust iris recognition system due to the development of an accurate segmentation method working for iris images taken under both the VL and NIR. In addition, the proposed protection scheme paves the way for a secure iris images and templates storage. Moreover, the proposed framework for cross-spectral matching will help to employ the iris biometric in several security applications such as surveillance at-a-distance and automated watch-list identification.Ministry of Higher Education and Scientific Research in Ira

Characterising pattern asymmetry in pigmented skin lesions

Abstract. In clinical diagnosis of pigmented skin lesions asymmetric pigmentation is often indicative of melanoma. This paper describes a method and measures for characterizing lesion symmetry. The estimate of mirror symmetry is computed first for a number of axes at different degrees of rotation with respect to the lesion centre. The statistics of these estimates are the used to assess the overall symmetry. The method is applied to three different lesion representations showing the overall pigmentation, the pigmentation pattern, and the pattern of dermal melanin. The best measure is a 100% sensitive and 96% specific indicator of melanoma on a test set of 33 lesions, with a separate training set consisting of 66 lesions