1,448 research outputs found
Automatic Alignment of 3D Multi-Sensor Point Clouds
Automatic 3D point cloud alignment is a major research topic in photogrammetry, computer vision and computer graphics. In this research, two keypoint feature matching approaches have been developed and proposed for the automatic alignment of 3D point clouds, which have been acquired from different sensor platforms and are in different 3D conformal coordinate systems.
The first proposed approach is based on 3D keypoint feature matching. First, surface curvature information is utilized for scale-invariant 3D keypoint extraction. Adaptive non-maxima suppression (ANMS) is then applied to retain the most distinct and well-distributed set of keypoints. Afterwards, every keypoint is characterized by a scale, rotation and translation invariant 3D surface descriptor, called the radial geodesic distance-slope histogram. Similar keypoints descriptors on the source and target datasets are then matched using bipartite graph matching, followed by a modified-RANSAC for outlier removal.
The second proposed method is based on 2D keypoint matching performed on height map images of the 3D point clouds. Height map images are generated by projecting the 3D point clouds onto a planimetric plane. Afterwards, a multi-scale wavelet 2D keypoint detector with ANMS is proposed to extract keypoints on the height maps. Then, a scale, rotation and translation-invariant 2D descriptor referred to as the Gabor, Log-Polar-Rapid Transform descriptor is computed for all keypoints. Finally, source and target height map keypoint correspondences are determined using a bi-directional nearest neighbour matching, together with the modified-RANSAC for outlier removal.
Each method is assessed on multi-sensor, urban and non-urban 3D point cloud datasets. Results show that unlike the 3D-based method, the height map-based approach is able to align source and target datasets with differences in point density, point distribution and missing point data. Findings also show that the 3D-based method obtained lower transformation errors and a greater number of correspondences when the source and target have similar point characteristics. The 3D-based approach attained absolute mean alignment differences in the range of 0.23m to 2.81m, whereas the height map approach had a range from 0.17m to 1.21m. These differences meet the proximity requirements of the data characteristics and the further application of fine co-registration approaches
A Low-Dimensional Representation for Robust Partial Isometric Correspondences Computation
Intrinsic isometric shape matching has become the standard approach for pose
invariant correspondence estimation among deformable shapes. Most existing
approaches assume global consistency, i.e., the metric structure of the whole
manifold must not change significantly. While global isometric matching is well
understood, only a few heuristic solutions are known for partial matching.
Partial matching is particularly important for robustness to topological noise
(incomplete data and contacts), which is a common problem in real-world 3D
scanner data. In this paper, we introduce a new approach to partial, intrinsic
isometric matching. Our method is based on the observation that isometries are
fully determined by purely local information: a map of a single point and its
tangent space fixes an isometry for both global and the partial maps. From this
idea, we develop a new representation for partial isometric maps based on
equivalence classes of correspondences between pairs of points and their
tangent spaces. From this, we derive a local propagation algorithm that find
such mappings efficiently. In contrast to previous heuristics based on RANSAC
or expectation maximization, our method is based on a simple and sound
theoretical model and fully deterministic. We apply our approach to register
partial point clouds and compare it to the state-of-the-art methods, where we
obtain significant improvements over global methods for real-world data and
stronger guarantees than previous heuristic partial matching algorithms.Comment: 17 pages, 12 figure
Surface-guided computing to analyze subcellular morphology and membrane-associated signals in 3D
Signal transduction and cell function are governed by the spatiotemporal
organization of membrane-associated molecules. Despite significant advances in
visualizing molecular distributions by 3D light microscopy, cell biologists
still have limited quantitative understanding of the processes implicated in
the regulation of molecular signals at the whole cell scale. In particular,
complex and transient cell surface morphologies challenge the complete sampling
of cell geometry, membrane-associated molecular concentration and activity and
the computing of meaningful parameters such as the cofluctuation between
morphology and signals. Here, we introduce u-Unwrap3D, a framework to remap
arbitrarily complex 3D cell surfaces and membrane-associated signals into
equivalent lower dimensional representations. The mappings are bidirectional,
allowing the application of image processing operations in the data
representation best suited for the task and to subsequently present the results
in any of the other representations, including the original 3D cell surface.
Leveraging this surface-guided computing paradigm, we track segmented surface
motifs in 2D to quantify the recruitment of Septin polymers by blebbing events;
we quantify actin enrichment in peripheral ruffles; and we measure the speed of
ruffle movement along topographically complex cell surfaces. Thus, u-Unwrap3D
provides access to spatiotemporal analyses of cell biological parameters on
unconstrained 3D surface geometries and signals.Comment: 49 pages, 10 figure
Synthetic aperture radar/LANDSAT MSS image registration
Algorithms and procedures necessary to merge aircraft synthetic aperture radar (SAR) and LANDSAT multispectral scanner (MSS) imagery were determined. The design of a SAR/LANDSAT data merging system was developed. Aircraft SAR images were registered to the corresponding LANDSAT MSS scenes and were the subject of experimental investigations. Results indicate that the registration of SAR imagery with LANDSAT MSS imagery is feasible from a technical viewpoint, and useful from an information-content viewpoint
On Visualizing Branched Surface: an Angle/Area Preserving Approach
The techniques of surface deformation and mapping are useful tools for the visualization of medical surfaces, especially for highly undulated or branched surfaces. In this thesis, two algorithms
are presented for flattened visualizations of multi-branched medical surfaces, such as vessels. The first algorithm is an angle preserving approach, which is based on conformal analysis. The mapping function is obtained by minimizing two Dirichlet functionals. On a triangulated representation of vessel surfaces, this algorithm can be implemented efficiently using a finite
element method. The second algorithm adjusts the result from conformal mapping to produce a flattened representation of the original surface while preserving areas. It employs the theory of
optimal mass transport via a gradient descent approach.
A new class of image morphing algorithms is also considered based on the theory of optimal mass transport. The mass moving energy functional is revised by adding an intensity penalizing term, in
order to reduce the undesired "fading" effects. It is a parameter free approach. This technique has been applied on several natural and medical images to generate in-between image sequences.Ph.D.Allen Tannenbaum Committee Chair
Anthony J. Yezzi, Committee Member;
James Gruden, Committee Member;
May D. Wang, Committee Member;
Oskar Skrinjar, Committee Membe
Automatic Reconstruction of Textured 3D Models
Three dimensional modeling and visualization of environments is an increasingly important problem. This work addresses the problem of automatic 3D reconstruction and we present a system for unsupervised reconstruction of textured 3D models in the context of modeling indoor environments. We present solutions to all aspects of the modeling process and an integrated system for the automatic creation of large scale 3D models
Learning shape correspondence with anisotropic convolutional neural networks
Establishing correspondence between shapes is a fundamental problem in
geometry processing, arising in a wide variety of applications. The problem is
especially difficult in the setting of non-isometric deformations, as well as
in the presence of topological noise and missing parts, mainly due to the
limited capability to model such deformations axiomatically. Several recent
works showed that invariance to complex shape transformations can be learned
from examples. In this paper, we introduce an intrinsic convolutional neural
network architecture based on anisotropic diffusion kernels, which we term
Anisotropic Convolutional Neural Network (ACNN). In our construction, we
generalize convolutions to non-Euclidean domains by constructing a set of
oriented anisotropic diffusion kernels, creating in this way a local intrinsic
polar representation of the data (`patch'), which is then correlated with a
filter. Several cascades of such filters, linear, and non-linear operators are
stacked to form a deep neural network whose parameters are learned by
minimizing a task-specific cost. We use ACNNs to effectively learn intrinsic
dense correspondences between deformable shapes in very challenging settings,
achieving state-of-the-art results on some of the most difficult recent
correspondence benchmarks
3D time series analysis of cell shape using Laplacian approaches
Background:
Fundamental cellular processes such as cell movement, division or food uptake critically depend on cells being able to change shape. Fast acquisition of three-dimensional image time series has now become possible, but we lack efficient tools for analysing shape deformations in order to understand the real three-dimensional nature of shape changes.
Results:
We present a framework for 3D+time cell shape analysis. The main contribution is three-fold: First, we develop a fast, automatic random walker method for cell segmentation. Second, a novel topology fixing method is proposed to fix segmented binary volumes without spherical topology. Third, we show that algorithms used for each individual step of the analysis pipeline (cell segmentation, topology fixing, spherical parameterization, and shape representation) are closely related to the Laplacian operator. The framework is applied to the shape analysis of neutrophil cells.
Conclusions:
The method we propose for cell segmentation is faster than the traditional random walker method or the level set method, and performs better on 3D time-series of neutrophil cells, which are comparatively noisy as stacks have to be acquired fast enough to account for cell motion. Our method for topology fixing outperforms the tools provided by SPHARM-MAT and SPHARM-PDM in terms of their successful fixing rates. The different tasks in the presented pipeline for 3D+time shape analysis of cells can be solved using Laplacian approaches, opening the possibility of eventually combining individual steps in order to speed up computations
Intersubject Regularity in the Intrinsic Shape of Human V1
Previous studies have reported considerable intersubject variability in the three-dimensional geometry of the human primary visual cortex (V1). Here we demonstrate that much of this variability is due to extrinsic geometric features of the cortical folds, and that the intrinsic shape of V1 is similar across individuals. V1 was imaged in ten ex vivo human hemispheres using high-resolution (200 μm) structural magnetic resonance imaging at high field strength (7 T). Manual tracings of the stria of Gennari were used to construct a surface representation, which was computationally flattened into the plane with minimal metric distortion. The instrinsic shape of V1 was determined from the boundary of the planar representation of the stria. An ellipse provided a simple parametric shape model that was a good approximation to the boundary of flattened V1. The aspect ration of the best-fitting ellipse was found to be consistent across subject, with a mean of 1.85 and standard deviation of 0.12. Optimal rigid alignment of size-normalized V1 produced greater overlap than that achieved by previous studies using different registration methods. A shape analysis of published macaque data indicated that the intrinsic shape of macaque V1 is also stereotyped, and similar to the human V1 shape. Previoud measurements of the functional boundary of V1 in human and macaque are in close agreement with these results
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