1,031 research outputs found

    Study of Computational Image Matching Techniques: Improving Our View of Biomedical Image Data

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    Image matching techniques are proven to be necessary in various fields of science and engineering, with many new methods and applications introduced over the years. In this PhD thesis, several computational image matching methods are introduced and investigated for improving the analysis of various biomedical image data. These improvements include the use of matching techniques for enhancing visualization of cross-sectional imaging modalities such as Computed Tomography (CT) and Magnetic Resonance Imaging (MRI), denoising of retinal Optical Coherence Tomography (OCT), and high quality 3D reconstruction of surfaces from Scanning Electron Microscope (SEM) images. This work greatly improves the process of data interpretation of image data with far reaching consequences for basic sciences research. The thesis starts with a general notion of the problem of image matching followed by an overview of the topics covered in the thesis. This is followed by introduction and investigation of several applications of image matching/registration in biomdecial image processing: a) registration-based slice interpolation, b) fast mesh-based deformable image registration and c) use of simultaneous rigid registration and Robust Principal Component Analysis (RPCA) for speckle noise reduction of retinal OCT images. Moving towards a different notion of image matching/correspondence, the problem of view synthesis and 3D reconstruction, with a focus on 3D reconstruction of microscopic samples from 2D images captured by SEM, is considered next. Starting from sparse feature-based matching techniques, an extensive analysis is provided for using several well-known feature detector/descriptor techniques, namely ORB, BRIEF, SURF and SIFT, for the problem of multi-view 3D reconstruction. This chapter contains qualitative and quantitative comparisons in order to reveal the shortcomings of the sparse feature-based techniques. This is followed by introduction of a novel framework using sparse-dense matching/correspondence for high quality 3D reconstruction of SEM images. As will be shown, the proposed framework results in better reconstructions when compared with state-of-the-art sparse-feature based techniques. Even though the proposed framework produces satisfactory results, there is room for improvements. These improvements become more necessary when dealing with higher complexity microscopic samples imaged by SEM as well as in cases with large displacements between corresponding points in micrographs. Therefore, based on the proposed framework, a new approach is proposed for high quality 3D reconstruction of microscopic samples. While in case of having simpler microscopic samples the performance of the two proposed techniques are comparable, the new technique results in more truthful reconstruction of highly complex samples. The thesis is concluded with an overview of the thesis and also pointers regarding future directions of the research using both multi-view and photometric techniques for 3D reconstruction of SEM images

    A Comprehensive Survey of Deep Learning in Remote Sensing: Theories, Tools and Challenges for the Community

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    In recent years, deep learning (DL), a re-branding of neural networks (NNs), has risen to the top in numerous areas, namely computer vision (CV), speech recognition, natural language processing, etc. Whereas remote sensing (RS) possesses a number of unique challenges, primarily related to sensors and applications, inevitably RS draws from many of the same theories as CV; e.g., statistics, fusion, and machine learning, to name a few. This means that the RS community should be aware of, if not at the leading edge of, of advancements like DL. Herein, we provide the most comprehensive survey of state-of-the-art RS DL research. We also review recent new developments in the DL field that can be used in DL for RS. Namely, we focus on theories, tools and challenges for the RS community. Specifically, we focus on unsolved challenges and opportunities as it relates to (i) inadequate data sets, (ii) human-understandable solutions for modelling physical phenomena, (iii) Big Data, (iv) non-traditional heterogeneous data sources, (v) DL architectures and learning algorithms for spectral, spatial and temporal data, (vi) transfer learning, (vii) an improved theoretical understanding of DL systems, (viii) high barriers to entry, and (ix) training and optimizing the DL.Comment: 64 pages, 411 references. To appear in Journal of Applied Remote Sensin

    Development Of A High Performance Mosaicing And Super-Resolution Algorithm

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    In this dissertation, a high-performance mosaicing and super-resolution algorithm is described. The scale invariant feature transform (SIFT)-based mosaicing algorithm builds an initial mosaic which is iteratively updated by the robust super resolution algorithm to achieve the final high-resolution mosaic. Two different types of datasets are used for testing: high altitude balloon data and unmanned aerial vehicle data. To evaluate our algorithm, five performance metrics are employed: mean square error, peak signal to noise ratio, singular value decomposition, slope of reciprocal singular value curve, and cumulative probability of blur detection. Extensive testing shows that the proposed algorithm is effective in improving the captured aerial data and the performance metrics are accurate in quantifying the evaluation of the algorithm

    A Survey on Deep Learning in Medical Image Analysis

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    Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

    New methods for deep dictionary learning and for image completion

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    Digital imaging plays an essential role in many aspects of our daily life. However due to the hardware limitations of the imaging devices, the image measurements are usually inpaired and require further processing to enhance the quality of the raw images in order to enable applications on the user side. Image enhancement aims to improve the information content within image measurements by exploiting the properties of the target image and the forward model of the imaging device. In this thesis, we aim to tackle two specific image enhancement problems, that is, single image super-resolution and image completion. First, we present a new Deep Analysis Dictionary Model (DeepAM) which consists of multiple layers of analysis dictionaries with associated soft-thresholding operators and a single layer of synthesis dictionary for single image super-resolution. To achieve an effective deep model, each analysis dictionary has been designed to be composed of an Information Preserving Analysis Dictionary (IPAD) which passes essential information from the input signal to output and a Clustering Analysis Dictionary (CAD) which generates discriminative feature representation. The parameters of the deep analysis dictionary model are optimized using a layer-wise learning strategy. We demonstrate that both the proposed deep dictionary design and the learning algorithm are effective. Simulation results show that the proposed method achieves comparable performance with Deep Neural Networks and other existing methods. We then generalize DeepAM to a Deep Convolutional Analysis Dictionary Model (DeepCAM) by learning convolutional dictionaries instead of unstructured dictionaries. The convolutional dictionary is more suitable for processing high-dimensional signals like images and has only a small number of free parameters. By exploiting the properties of a convolutional dictionary, we present an efficient convolutional analysis dictionary learning algorithm. The IPAD and the CAD parts are learned using variations of the proposed convolutional analysis dictionary learning algorithm. We demonstrate that DeepCAM is an effective multi-layer convolutional model and achieves better performance than DeepAM while using a smaller number of parameters. Finally, we present an image completion algorithm based on dense correspondence between the input image and an exemplar image retrieved from Internet which has been taken at a similar position. The dense correspondence which is estimated using a hierarchical PatchMatch algorithm is usually noisy and with a large occlusion area corresponding to the region to be completed. By modelling the dense correspondence as a smooth field, an Expectation-Maximization (EM) based method is presented to interpolate a smooth field over the occlusion area which is then used to transfer image content from the exemplar image to the input image. Color correction is further applied to diminish the possible color differences between the input image and the exemplar image. Numerical results demonstrate that the proposed image completion algorithm is able to achieve photo realistic image completion results.Open Acces

    Deformable shape matching

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    Deformable shape matching has become an important building block in academia as well as in industry. Given two three dimensional shapes A and B the deformation function f aligning A with B has to be found. The function is discretized by a set of corresponding point pairs. Unfortunately, the computation cost of a brute-force search of correspondences is exponential. Additionally, to be of any practical use the algorithm has to be able to deal with data coming directly from 3D scanner devices which suffers from acquisition problems like noise, holes as well as missing any information about topology. This dissertation presents novel solutions for solving shape matching: First, an algorithm estimating correspondences using a randomized search strategy is shown. Additionally, a planning step dramatically reducing the matching costs is incorporated. Using ideas of these both contributions, a method for matching multiple shapes at once is shown. The method facilitates the reconstruction of shape and motion from noisy data acquired with dynamic 3D scanners. Considering shape matching from another perspective a solution is shown using Markov Random Fields (MRF). Formulated as MRF, partial as well as full matches of a shape can be found. Here, belief propagation is utilized for inference computation in the MRF. Finally, an approach significantly reducing the space-time complexity of belief propagation for a wide spectrum of computer vision tasks is presented.Anpassung deformierbarer Formen ist zu einem wichtigen Baustein in der akademischen Welt sowie in der Industrie geworden. Gegeben zwei dreidimensionale Formen A und B, suchen wir nach einer Verformungsfunktion f, die die Deformation von A auf B abbildet. Die Funktion f wird durch eine Menge von korrespondierenden Punktepaaren diskretisiert. Leider sind die Berechnungskosten für eine Brute-Force-Suche dieser Korrespondenzen exponentiell. Um zusätzlich von einem praktischen Nutzen zu sein, muss der Suchalgorithmus in der Lage sein, mit Daten, die direkt aus 3D-Scanner kommen, umzugehen. Bedauerlicherweise leiden diese Daten unter Akquisitionsproblemen wie Rauschen, Löcher sowie fehlender Topologieinformation. In dieser Dissertation werden neue Lösungen für das Problem der Formanpassung präsentiert. Als erstes wird ein Algorithmus gezeigt, der die Korrespondenzen mittels einer randomisierten Suchstrategie schätzt. Zusätzlich wird anhand eines automatisch berechneten Schätzplanes die Geschwindigkeit der Suchstrategie verbessert. Danach wird ein Verfahren gezeigt, dass die Anpassung mehrerer Formen gleichzeitig bewerkstelligen kann. Diese Methode ermöglicht es, die Bewegung, sowie die eigentliche Struktur des Objektes aus verrauschten Daten, die mittels dynamischer 3D-Scanner aufgenommen wurden, zu rekonstruieren. Darauffolgend wird das Problem der Formanpassung aus einer anderen Perspektive betrachtet und als Markov-Netzwerk (MRF) reformuliert. Dieses ermöglicht es, die Formen auch stückweise aufeinander abzubilden. Die eigentliche Lösung wird mittels Belief Propagation berechnet. Schließlich wird ein Ansatz gezeigt, der die Speicher-Zeit-Komplexität von Belief Propagation für ein breites Spektrum von Computer-Vision Problemen erheblich reduziert

    Robust density modelling using the student's t-distribution for human action recognition

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    The extraction of human features from videos is often inaccurate and prone to outliers. Such outliers can severely affect density modelling when the Gaussian distribution is used as the model since it is highly sensitive to outliers. The Gaussian distribution is also often used as base component of graphical models for recognising human actions in the videos (hidden Markov model and others) and the presence of outliers can significantly affect the recognition accuracy. In contrast, the Student's t-distribution is more robust to outliers and can be exploited to improve the recognition rate in the presence of abnormal data. In this paper, we present an HMM which uses mixtures of t-distributions as observation probabilities and show how experiments over two well-known datasets (Weizmann, MuHAVi) reported a remarkable improvement in classification accuracy. © 2011 IEEE

    Visual analysis and synthesis with physically grounded constraints

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    The past decade has witnessed remarkable progress in image-based, data-driven vision and graphics. However, existing approaches often treat the images as pure 2D signals and not as a 2D projection of the physical 3D world. As a result, a lot of training examples are required to cover sufficiently diverse appearances and inevitably suffer from limited generalization capability. In this thesis, I propose "inference-by-composition" approaches to overcome these limitations by modeling and interpreting visual signals in terms of physical surface, object, and scene. I show how we can incorporate physically grounded constraints such as scene-specific geometry in a non-parametric optimization framework for (1) revealing the missing parts of an image due to removal of a foreground or background element, (2) recovering high spatial frequency details that are not resolvable in low-resolution observations. I then extend the framework from 2D images to handle spatio-temporal visual data (videos). I demonstrate that we can convincingly fill spatio-temporal holes in a temporally coherent fashion by jointly reconstructing the appearance and motion. Compared to existing approaches, our technique can synthesize physically plausible contents even in challenging videos. For visual analysis, I apply stereo camera constraints for discovering multiple approximately linear structures in extremely noisy videos with an ecological application to bird migration monitoring at night. The resulting algorithms are simple and intuitive while achieving state-of-the-art performance without the need of training on an exhaustive set of visual examples

    Patch-based graphical models for image restoration

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    Proceedings of the second "international Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST'14)

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    The implicit objective of the biennial "international - Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST) is to foster collaboration between international scientific teams by disseminating ideas through both specific oral/poster presentations and free discussions. For its second edition, the iTWIST workshop took place in the medieval and picturesque town of Namur in Belgium, from Wednesday August 27th till Friday August 29th, 2014. The workshop was conveniently located in "The Arsenal" building within walking distance of both hotels and town center. iTWIST'14 has gathered about 70 international participants and has featured 9 invited talks, 10 oral presentations, and 14 posters on the following themes, all related to the theory, application and generalization of the "sparsity paradigm": Sparsity-driven data sensing and processing; Union of low dimensional subspaces; Beyond linear and convex inverse problem; Matrix/manifold/graph sensing/processing; Blind inverse problems and dictionary learning; Sparsity and computational neuroscience; Information theory, geometry and randomness; Complexity/accuracy tradeoffs in numerical methods; Sparsity? What's next?; Sparse machine learning and inference.Comment: 69 pages, 24 extended abstracts, iTWIST'14 website: http://sites.google.com/site/itwist1
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