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The detection and classification of blast cell in Leukaemia Acute Promyelocytic Leukaemia (AML M3) blood using simulated annealing and neural networks
This paper was delivered at AIME 2011: 13th Conference on Artifical Intelligence in Medicine.This paper presents a method for the detection and classification of blast cells in M3 with others sub-types using simulated annealing and neural networks. In this paper, we increased our test result from 10 images to 20 images. We performed Hill Climbing, Simulated Annealing and Genetic Algorithms for detecting the blast cells. As a result, simulated annealing is the ābestā heuristic search for detecting the leukaemia cells. From the detection, we performed features extraction on the blast cells and we classifying based on M3 and other sub-types using neural networks. We received convincing result which has targeting around 97% in classifying of M3 with other sub-types. Our results are based on real world image data from a Haematology Department.Universiti Sains Islam Malaysia and the Ministry of Higher Education, Malaysi
Monocular Vision as a Range Sensor
One of the most important abilities for a mobile robot is detecting obstacles in order to avoid collisions. Building a map of these obstacles is the next logical step. Most robots to date have used sensors such as passive or active infrared, sonar or laser range finders to locate obstacles in their path. In contrast, this work uses a single colour camera as the only sensor, and consequently the robot must obtain range information from the camera images. We propose simple methods for determining the range to the nearest obstacle in any direction in the robotās field of view, referred to as the Radial Obstacle Profile. The ROP can then be used to determine the amount of rotation between two successive images, which is important for constructing a 360Āŗ view of the surrounding environment as part of map construction
Gray Image extraction using Fuzzy Logic
Fuzzy systems concern fundamental methodology to represent and process
uncertainty and imprecision in the linguistic information. The fuzzy systems
that use fuzzy rules to represent the domain knowledge of the problem are known
as Fuzzy Rule Base Systems (FRBS). On the other hand image segmentation and
subsequent extraction from a noise-affected background, with the help of
various soft computing methods, are relatively new and quite popular due to
various reasons. These methods include various Artificial Neural Network (ANN)
models (primarily supervised in nature), Genetic Algorithm (GA) based
techniques, intensity histogram based methods etc. providing an extraction
solution working in unsupervised mode happens to be even more interesting
problem. Literature suggests that effort in this respect appears to be quite
rudimentary. In the present article, we propose a fuzzy rule guided novel
technique that is functional devoid of any external intervention during
execution. Experimental results suggest that this approach is an efficient one
in comparison to different other techniques extensively addressed in
literature. In order to justify the supremacy of performance of our proposed
technique in respect of its competitors, we take recourse to effective metrics
like Mean Squared Error (MSE), Mean Absolute Error (MAE), Peak Signal to Noise
Ratio (PSNR).Comment: 8 pages, 5 figures, Fuzzy Rule Base, Image Extraction, Fuzzy
Inference System (FIS), Membership Functions, Membership values,Image coding
and Processing, Soft Computing, Computer Vision Accepted and published in
IEEE. arXiv admin note: text overlap with arXiv:1206.363
ARIGAN: Synthetic Arabidopsis Plants using Generative Adversarial Network
In recent years, there has been an increasing interest in image-based plant
phenotyping, applying state-of-the-art machine learning approaches to tackle
challenging problems, such as leaf segmentation (a multi-instance problem) and
counting. Most of these algorithms need labelled data to learn a model for the
task at hand. Despite the recent release of a few plant phenotyping datasets,
large annotated plant image datasets for the purpose of training deep learning
algorithms are lacking. One common approach to alleviate the lack of training
data is dataset augmentation. Herein, we propose an alternative solution to
dataset augmentation for plant phenotyping, creating artificial images of
plants using generative neural networks. We propose the Arabidopsis Rosette
Image Generator (through) Adversarial Network: a deep convolutional network
that is able to generate synthetic rosette-shaped plants, inspired by DCGAN (a
recent adversarial network model using convolutional layers). Specifically, we
trained the network using A1, A2, and A4 of the CVPPP 2017 LCC dataset,
containing Arabidopsis Thaliana plants. We show that our model is able to
generate realistic 128x128 colour images of plants. We train our network
conditioning on leaf count, such that it is possible to generate plants with a
given number of leaves suitable, among others, for training regression based
models. We propose a new Ax dataset of artificial plants images, obtained by
our ARIGAN. We evaluate this new dataset using a state-of-the-art leaf counting
algorithm, showing that the testing error is reduced when Ax is used as part of
the training data.Comment: 8 pages, 6 figures, 1 table, ICCV CVPPP Workshop 201
Joint co-clustering: co-clustering of genomic and clinical bioimaging data
AbstractFor better understanding the genetic mechanisms underlying clinical observations, and better defining a group of potential candidates for protein-family-inhibiting therapy, it is interesting to determine the correlations between genomic, clinical data and data coming from high resolution and fluorescent microscopy. We introduce a computational method, called joint co-clustering, that can find co-clusters or groups of genes, bioimaging parameters and clinical traits that are believed to be closely related to each other based on the given empirical information. As bioimaging parameters, we quantify the expression of growth factor receptor EGFR/erb-B family in non-small cell lung carcinoma (NSCLC) through a fully-automated computer-aided analysis approach. This immunohistochemical analysis is usually performed by pathologists via visual inspection of tissue samples images. Our fully-automated techniques streamlines this error-prone and time-consuming process, thereby facilitating analysis and diagnosis. Experimental results for several real-life datasets demonstrate the high quantitative precision of our approach. The joint co-clustering method was tested with the receptor EGFR/erb-B family data on non-small cell lung carcinoma (NSCLC) tissue and identified statistically significant co-clusters of genes, receptor protein expression and clinical traits. The validation of our results with the literature suggest that the proposed method can provide biologically meaningful co-clusters of genes and traits and that it is a very promising approach to analyse large-scale biological data and to study multi-factorial genetic pathologies through their genetic alterations
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