Identifying and Harnessing Concurrency for Parallel and Distributed Network Simulation

Although computer networks are inherently parallel systems, the parallel execution of network simulations on interconnected processors frequently yields only limited benefits. In this thesis, methods are proposed to estimate and understand the parallelization potential of network simulations. Further, mechanisms and architectures for exploiting the massively parallel processing resources of modern graphics cards to accelerate network simulations are proposed and evaluated

Identifying and Harnessing Concurrency for Parallel and Distributed Network Simulation

Although computer networks are inherently parallel systems, the parallel execution of network simulations on interconnected processors frequently yields only limited benefits. In this thesis, methods are proposed to estimate and understand the parallelization potential of network simulations. Further, mechanisms and architectures for exploiting the massively parallel processing resources of modern graphics cards to accelerate network simulations are proposed and evaluated

Identifying and Harnessing Concurrency for Parallel and Distributed Network Simulation

Although computer networks are inherently parallel systems, the parallel execution of network simulations on interconnected processors frequently yields only limited benefits. In this thesis, methods are proposed to estimate and understand the parallelization potential of network simulations. Further, mechanisms and architectures for exploiting the massively parallel processing resources of modern graphics cards to accelerate network simulations are proposed and evaluated

Adaptive Transactional Memories: Performance and Energy Consumption Tradeoffs

Energy efficiency is becoming a pressing issue, especially in large data centers where it entails, at the same time, a non-negligible management cost, an enhancement of hardware fault probability, and a significant environmental footprint. In this paper, we study how Software Transactional Memories (STM) can provide benefits on both power saving and the overall applications’ execution performance. This is related to the fact that encapsulating shared-data accesses within transactions gives the freedom to the STM middleware to both ensure consistency and reduce the actual data contention, the latter having been shown to affect the overall power needed to complete the application’s execution. We have selected a set of self-adaptive extensions to existing STM middlewares (namely, TinySTM and R-STM) to prove how self-adapting computation can capture the actual degree of parallelism and/or logical contention on shared data in a better way, enhancing even more the intrinsic benefits provided by STM. Of course, this benefit comes at a cost, which is the actual execution time required by the proposed approaches to precisely tune the execution parameters for reducing power consumption and enhancing execution performance. Nevertheless, the results hereby provided show that adaptivity is a strictly necessary requirement to reduce energy consumption in STM systems: Without it, it is not possible to reach any acceptable level of energy efficiency at all

Grid and P2P middleware for scientific computing systems

Grid and P2P systems have achieved a notable success in the domain of scientific and engineering applications, which commonly demand considerable amounts of computational resources. However, Grid and P2P systems remain still difficult to be used by the domain scientists and engineers due to the inherent complexity of the corresponding middleware and the lack of adequate documentation. In this paper we survey recent developments of Grid and P2P middleware in the context of scientific computing systems. The differences on the approaches taken for Grid and P2P middleware as well as the common points of both paradigms are highlighted. In addition, we discuss the corresponding programming models, languages, and applications.Peer ReviewedPostprint (published version

A Novel Scoring Based Distributed Protein Docking Application to Improve Enrichment

Molecular docking is a computational technique which predicts the binding energy and the preferred binding mode of a ligand to a protein target. Virtual screening is a tool which uses docking to investigate large chemical libraries to identify ligands that bind favorably to a protein target. We have developed a novel scoring based distributed protein docking application to improve enrichment in virtual screening. The application addresses the issue of time and cost of screening in contrast to conventional systematic parallel virtual screening methods in two ways. Firstly, it automates the process of creating and launching multiple independent dockings on a high performance computing cluster. Secondly, it uses a N˙ aive Bayes scoring function to calculate binding energy of un-docked ligands to identify and preferentially dock (Autodock predicted) better binders. The application was tested on four proteins using a library of 10,573 ligands. In all the experiments, (i). 200 of the 1000 best binders are identified after docking only 14% of the chemical library, (ii). 9 or 10 best-binders are identified after docking only 19% of the chemical library, and (iii). no significant enrichment is observed after docking 70% of the chemical library. The results show significant increase in enrichment of potential drug leads in early rounds of virtual screening

Power Consumption and Carbon Emission Equivalent for Virtualized Resources – An Analysis: Virtual Machine and Container Analysis for Greener Data Center

The International Energy Agency (IEA) revealed that the worldwide energy-related carbon dioxide (CO2) situation has hit a historic high of 33.1 Giga tonnes (Gt) of CO2. 85% of the rise in emissions was due to China, India, and the United States. The increase in emissions in India was 4.8%, or 105 Mega tonnes (Mt) of CO2, with the increase in emissions being evenly distributed across the transportation and industrial sectors, according to Beloglazov et al (2011). Environmental contamination brought on by carbon emissions is harmful to the environment. As a result, there is an urgent need for the IT sectors to develop effective and efficient technology to eliminate such carbon emissions. The primary focus is on lowering carbon emissions due to widespread awareness of the issue

Harnessing Intellectual Resources in a Collaborative Context to Create Value

The value of electronic collaboration has arisen as successful organisations recognize that they need to convert their intellectual resources into customized services. The shift from personal computing to interpersonal or collaborative computing has given rise to ways of working that may bring about better and more effective use of intellectual resources. Current efforts in managing knowledge have concentrated on producing; sharing and storing knowledge while business problems require the combined use of these intellectual resources to enable organisations to provide innovative and customized services. In this chapter the collaborative context is developed using a model for electronic collaboration through the use of which organisations may mobilse collaborative technologies and intellectual resources towards achieving joint effect.electronic collaboration;value creation;collaborative computing;knowledge management and intellectual resources