Evaluating Cache Coherent Shared Virtual Memory for Heterogeneous Multicore Chips

The trend in industry is towards heterogeneous multicore processors (HMCs), including chips with CPUs and massively-threaded throughput-oriented processors (MTTOPs) such as GPUs. Although current homogeneous chips tightly couple the cores with cache-coherent shared virtual memory (CCSVM), this is not the communication paradigm used by any current HMC. In this paper, we present a CCSVM design for a CPU/MTTOP chip, as well as an extension of the pthreads programming model, called xthreads, for programming this HMC. Our goal is to evaluate the potential performance benefits of tightly coupling heterogeneous cores with CCSVM

Exploiting different levels of parallelism in the biological sequence comparison problem

In the last years the fast growth of bioinformatics field has atracted the attention of computer scientists. At the same time, de exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms. In this work, we investigate how bioinformatics applications benefit from parallel architectures that combine different alternatives to exploit coarse- and fine-grain parallelism. As a case of analysis, we study the performance behavior of the Ssearch application that implements the Smith-Waterman algorithm (SW), which is a dynamic programing approach that explores the similarity between a pair of sequences. The inherent large parallelism of the application makes it ideal for architectures supporting multiple dimensions of parallelism (thread-level parallelism, TLP; data-level parallelism, DLP; instruction-level parallelism, ILP). We study how this algorithm can take advantage of different parallel machines like the SGI Altix, IBM Power6, IBM Cell BE and MareNostrum machines. Our study includes a qualitative analysis of the parallelization opportunities and also the quantification of the performance in terms of speedup and execution time. These measures are collected taking into account the specific characteristics of each architecture. As an example, our results show that a share memory multiprocessor architecture (SMP) like the PowerPC 970MP of Marenostrum machine can surpasses a heterogeneous multi- processor machine like the current IBM Cell BE.Peer ReviewedPostprint (published version

A research-oriented course on Advanced Multicore Architecture: Contents and active learning methodologies

[EN] The fast evolution of multicore processors makes it difficult for professors to offer computer architecture courses with updated contents. To deal with this shortcoming that could discourage students, the most appropriate solution is a research-oriented course based on current microprocessor industry trends. Additionally, we also seek to improve the students' skills by applying active learning methodologies, where teachers act as guiders and resource providers while students take the responsibility for their learning. In this paper, we present the Advanced Multicore Architecture (AMA) course, which follows a research-oriented approach to introduce students in architectural breakthroughs and uses active learning methodologies to enable students to develop practical research skills such as critical analysis of research papers or communication abilities. To this end five main activities are used: (i) lectures dealing with key theoretical concepts, (ii) paper review & discussion, (iii) research-oriented practical exercises, (iv) lab sessions with a state-of-the-art multicore simulator, and (v) paper presentation. An important part of all these activities is driven by active learning methodologies. Special emphasis is put on the practical side by allocating 40% of the time to labs and exercises. This work also includes an assessment study that analyzes both the course contents and the used methodology (both of them compared to other courses).This work was supported in part by the Spanish Ministerio de Economia y Competitividad (MINECO) and by Plan E funds under Grant TIN2014-62246-EXP and Grant TIN2015-66972-C5-1-R, and by Generalitat Valenciana under grant AICO/2016/059. Authors also would like to thank Onur Mutlu for making available online his valuable teaching material.Petit Martí, SV.; Sahuquillo Borrás, J.; Gómez Requena, ME.; Selfa-Oliver, V. (2017). A research-oriented course on Advanced Multicore Architecture: Contents and active learning methodologies. Journal of Parallel and Distributed Computing. 105:63-72. https://doi.org/10.1016/j.jpdc.2017.01.011S637210

Improving the efficiency of multicore systems through software and hardware cooperation

Increasing processors' clock frequency has traditionally been one of the largest drivers of performance improvements for computing systems. In the first half of the 2000s, however, it became clear that continuing to increase frequency was not a viable solution anymore. Power consumption and power density became prohibitively costly, and processor manufacturers moved to multicore designs. This new paradigm introduced multiple challenges not present in single-threaded processors. Applications running on multicore systems share different resources such as the cache hierarchy and the memory bus. Resource sharing occurs at much finer degree when cores support multithreading as well. In this case, applications share the processor¿s pipeline too. Running multiple applications on the same processor allows for better utilization of its resources¿which otherwise may just lie idle if an application does not use them. But sharing resources may create interferences between applications running on the system. While the degree of these interferences depends on the nature of the applications, it is typically desirable to reduce them in order to improve efficiency. Most currently available processors expose a set of sensors and actuators that software can use to monitor and control resource sharing among the applications running on a system. But it is typically up to end users to analyze their workloads of interest and to manually use the actuators provided by the processor. Because of this, in many cases the different mechanisms for controlling resource sharing are simply left unused. In this thesis we present different techniques that rely on software/hardware interaction to monitor and improve application interference¿and thus improve system efficiency. First we conduct a quantitative study showing the benefits of hardware/software cooperation on system efficiency. Then we narrow our focus on a given hardware knob: data prefetching. Specifically we develop and evaluate several adaptive solutions for improving the efficiency of hardware data prefetching on multicore systems. The impact of the solutions presented in this thesis, however, goes beyond the particular case of data prefetching. They serve as illustrative examples for developing software/hardware cooperation schemes that enable the efficient sharing of resources in multicore systems.L'increment de la freqüència dels processadors ha estat tradicionalment un dels majors responsables de la millora de rendiment dels sistemes de computació. Tanmateix, a la primera meitat del segle XXI es va fer evident que continuar incrementant la freqüència ja no era una solució viable. El consum de potència i la densitat de potència van esdevenir massa costosos, i els dissenyadors de processadors van adoptar dissenys "multicore". Aquest nou paradigma va introduir molts reptes que no eren presents als processadors "single-threaded". Les aplicacions que s'executen a processadors multicore comparteixen diferent recursos tal i com la jerarquia de "cache" i el bus de memòria. En processadors que suporten "multi-threading" encara comparteixen més recursos: en aquest cas les aplicacions també comparteixen els recursos del "pipeline". Executar diverses aplicacions en un processador permet una millor utilització dels seus recursos, que d'altra forma podrien no tenir cap utilitat si l'aplicació en execució no els utilitzés. Compartir recursos, però, pot crear interferències entre les aplicacions executant-se al sistema. Encara que el nivell d'aquestes interferències depèn de les aplicacions que s'executen conjuntament, normalment és desitjable reduir-les per tal de millorar la eficiència. Molts dels processadors actuals exposen un conjunt sensors i actuadors que el software pot utilitzar per supervisar i controlar la compartició de recursos entre les diferents aplicacions executant-se al sistema. En general és responsabilitat dels usuaris analitzar les aplicacions del seu interès i després configurar els actuadors de forma manual. Això suposa una dificultat afegida i per aquest motiu, en molts casos els diferents mecanismes per controlar com es comparteixen els recursos senzillament no es fan servir. En aquesta tesi, presentem diferents tècniques basades en la interacció del software i el hardware per supervisar i reduir la interferència entre aplicacions, i d'aquesta forma millorar la eficiència del sistema. Primer es presenta un estudi quantitatiu que mostra els beneficis de la cooperació entre software i hardware en la eficiència del sistema. Després el focus es centra en un actuador en concret: "data prefetching". En concret, desenvolupem i avaluem diferents solucions adaptatives per millorar la eficiència de hardware data prefetching a sistemes multicore. L'impacte de les solucions presentades a aquesta tesi, però, no es limiten a aquest cas concret. Al contrari, serveixen com exemples il·lustratius per desenvolupar tècniques de cooperació software i hardware que permetin compartir els recursos en sistemes multicore de forma eficient. La compartició de recursos en un processador és un factor crucial que afecta significativament a la seva eficiència. Però, altres nivells d'un sistema de computació també comparteixen recursos. En grans instal·lacions de computació com els "datacenters", les aplicacions també poden compartir altres recursos com la xarxa o l'emmagatzemament. Com a cas d'estudi considerem el disseny d'un sistema d'un sistema de comptabilitat d'energia basat en la cooperació entre el software i el hardware per a grans instal·lacions de computació. En aquest context, explorem diverses alternatives per als sensors i actuadors que es requereixen, així com també analitzem els diferents aspectes claus en el disseny d'un sistema d'aquestes característiques

Scalable system software for high performance large-scale applications

In the last decades, high-performance large-scale systems have been a fundamental tool for scientific discovery and engineering advances. The sustained growth of supercomputing performance and the concurrent reduction in cost have made this technology available for a large number of scientists and engineers working on many different problems. The design of next-generation supercomputers will include traditional HPC requirements as well as the new requirements to handle data-intensive computations. Data intensive applications will hence play an important role in a variety of fields, and are the current focus of several research trends in HPC. Due to the challenges of scalability and power efficiency, next-generation of supercomputers needs a redesign of the whole software stack. Being at the bottom of the software stack, system software is expected to change drastically to support the upcoming hardware and to meet new application requirements. This PhD thesis addresses the scalability of system software. The thesis start at the Operating System level: first studying general-purpose OS (ex. Linux) and then studying lightweight kernels (ex. CNK). Then, we focus on the runtime system: we implement a runtime system for distributed memory systems that includes many of the system services required by next-generation applications. Finally we focus on hardware features that can be exploited at user-level to improve applications performance, and potentially included into our advanced runtime system. The thesis contributions are the following: Operating System Scalability: We provide an accurate study of the scalability problems of modern Operating Systems for HPC. We design and implement a methodology whereby detailed quantitative information may be obtained for each OS noise event. We validate our approach by comparing it to other well-known standard techniques to analyze OS noise, such FTQ (Fixed Time Quantum). Evaluation of the address translation management for a lightweight kernel: we provide a performance evaluation of different TLB management approaches ¿ dynamic memory mapping, static memory mapping with replaceable TLB entries, and static memory mapping with fixed TLB entries (no TLB misses) on a IBM BlueGene/P system. Runtime System Scalability: We show that a runtime system can efficiently incorporate system services and improve scalability for a specific class of applications. We design and implement a full-featured runtime system and programming model to execute irregular appli- cations on a commodity cluster. The runtime library is called Global Memory and Threading library (GMT) and integrates a locality-aware Partitioned Global Address Space communication model with a fork/join program structure. It supports massive lightweight multi-threading, overlapping of communication and computation and small messages aggregation to tolerate network latencies. We compare GMT to other PGAS models, hand-optimized MPI code and custom architectures (Cray XMT) on a set of large scale irregular applications: breadth first search, random walk and concurrent hash map access. Our runtime system shows performance orders of magnitude higher than other solutions on commodity clusters and competitive with custom architectures. User-level Scalability Exploiting Hardware Features: We show the high complexity of low-level hardware optimizations for single applications, as a motivation to incorporate this logic into an adaptive runtime system. We evaluate the effects of controllable hardware-thread priority mechanism that controls the rate at which each hardware-thread decodes instruction on IBM POWER5 and POWER6 processors. Finally, we show how to effectively exploits cache locality and network-on-chip on the Tilera many-core architecture to improve intra-core scalability

Understanding Soft Errors in Uncore Components

The effects of soft errors in processor cores have been widely studied. However, little has been published about soft errors in uncore components, such as memory subsystem and I/O controllers, of a System-on-a-Chip (SoC). In this work, we study how soft errors in uncore components affect system-level behaviors. We have created a new mixed-mode simulation platform that combines simulators at two different levels of abstraction, and achieves 20,000x speedup over RTL-only simulation. Using this platform, we present the first study of the system-level impact of soft errors inside various uncore components of a large-scale, multi-core SoC using the industrial-grade, open-source OpenSPARC T2 SoC design. Our results show that soft errors in uncore components can significantly impact system-level reliability. We also demonstrate that uncore soft errors can create major challenges for traditional system-level checkpoint recovery techniques. To overcome such recovery challenges, we present a new replay recovery technique for uncore components belonging to the memory subsystem. For the L2 cache controller and the DRAM controller components of OpenSPARC T2, our new technique reduces the probability that an application run fails to produce correct results due to soft errors by more than 100x with 3.32% and 6.09% chip-level area and power impact, respectively.Comment: to be published in Proceedings of the 52nd Annual Design Automation Conferenc