Some resonances between Eastern thought and Integral Biomathics in the framework of the WLIMES formalism for modelling living systems

Forty-two years ago, Capra published “The Tao of Physics” (Capra, 1975). In this book (page 17) he writes: “The exploration of the atomic and subatomic world in the twentieth century has …. necessitated a radical revision of many of our basic concepts” and that, unlike ‘classical’ physics, the sub-atomic and quantum “modern physics” shows resonances with Eastern thoughts and “leads us to a view of the world which is very similar to the views held by mystics of all ages and traditions.“ This article stresses an analogous situation in biology with respect to a new theoretical approach for studying living systems, Integral Biomathics (IB), which also exhibits some resonances with Eastern thought. Stepping on earlier research in cybernetics1 and theoretical biology,2 IB has been developed since 2011 by over 100 scientists from a number of disciplines who have been exploring a substantial set of theoretical frameworks. From that effort, the need for a robust core model utilizing advanced mathematics and computation adequate for understanding the behavior of organisms as dynamic wholes was identified. At this end, the authors of this article have proposed WLIMES (Ehresmann and Simeonov, 2012), a formal theory for modeling living systems integrating both the Memory Evolutive Systems (Ehresmann and Vanbremeersch, 2007) and the Wandering Logic Intelligence (Simeonov, 2002b). Its principles will be recalled here with respect to their resonances to Eastern thought

A Survey on Surrogate-assisted Efficient Neural Architecture Search

Neural architecture search (NAS) has become increasingly popular in the deep learning community recently, mainly because it can provide an opportunity to allow interested users without rich expertise to benefit from the success of deep neural networks (DNNs). However, NAS is still laborious and time-consuming because a large number of performance estimations are required during the search process of NAS, and training DNNs is computationally intensive. To solve the major limitation of NAS, improving the efficiency of NAS is essential in the design of NAS. This paper begins with a brief introduction to the general framework of NAS. Then, the methods for evaluating network candidates under the proxy metrics are systematically discussed. This is followed by a description of surrogate-assisted NAS, which is divided into three different categories, namely Bayesian optimization for NAS, surrogate-assisted evolutionary algorithms for NAS, and MOP for NAS. Finally, remaining challenges and open research questions are discussed, and promising research topics are suggested in this emerging field.Comment: 18 pages, 7 figure

Case board, traces, & chicanes: Diagrams for an archaeology of algorithmic prediction through critical design practice

This PhD thesis utilises diagrams as a language for research and design practice to critically investigate algorithmic prediction. As a tool for practice-based research, the language of diagrams is presented as a way to read algorithmic prediction as a set of intricate computational geometries, and to write it through critical practice immersed in the very materials in question: data and code. From a position rooted in graphic and interaction design, the research uses diagrams to gain purchase on algorithmic prediction, making it available for examination, experimentation, and critique. The project is framed by media archaeology, used here as a methodology through which both the technical and historical "depths" of algorithmic systems are excavated. My main research question asks: How can diagrams be used as a language to critically investigate algorithmic prediction through design practice? This thesis presents two secondary questions for critical examination, asking: Through which mechanisms does thinking/writing/designing in diagrammatic terms inform research and practice focused on algorithmic prediction? As algorithmic systems claim to produce objective knowledge, how can diagrams be used as instruments for speculative and/or conjectural knowledge production? I contextualise my research by establishing three registers of relations between diagrams and algorithmic prediction. These are identified as: Data Diagrams to describe the algorithmic forms and processes through which data are turned into predictions; Control Diagrams to afford critical perspectives on algorithmic prediction, framing the latter as an apparatus of prescription and control; and Speculative Diagrams to open up opportunities for reclaiming the generative potential of computation. These categories form the scaffolding for the three practice-oriented chapters where I evidence a range of meaningful ways to investigate algorithmic prediction through diagrams. This includes, the 'case board' where I unpack some of the historical genealogies of algorithmic prediction. A purpose-built graph application materialises broader reflections about how such genealogies might be conceptualised, and facilitates a visual and subjective mode of knowledge production. I then move to producing 'traces', namely probing the output of an algorithmic prediction system|in this case YouTube recommendations. Traces, and the purpose-built instruments used to visualise them, interrogate both the mechanisms of algorithmic capture and claims to make these mechanisms transparent through data visualisations. Finally, I produce algorithmic predictions and examine the diagrammatic "tricks," or 'chicanes', that this involves. I revisit a historical prototype for algorithmic prediction, the almanac publication, and use it to question the boundaries between data-science and divination. This is materialised through a new version of the almanac - an automated publication where algorithmic processes are used to produce divinatory predictions. My original contribution to knowledge is an approach to practice-based research which draws from media archaeology and focuses on diagrams to investigate algorithmic prediction through design practice. I demonstrate to researchers and practitioners with interests in algorithmic systems, prediction, and/or speculation, that diagrams can be used as a language to engage critically with these themes

A Survey on Evolutionary Computation for Computer Vision and Image Analysis: Past, Present, and Future Trends

Computer vision (CV) is a big and important field in artificial intelligence covering a wide range of applications. Image analysis is a major task in CV aiming to extract, analyse and understand the visual content of images. However, imagerelated tasks are very challenging due to many factors, e.g., high variations across images, high dimensionality, domain expertise requirement, and image distortions. Evolutionary computation (EC) approaches have been widely used for image analysis with significant achievement. However, there is no comprehensive survey of existing EC approaches to image analysis. To fill this gap, this paper provides a comprehensive survey covering all essential EC approaches to important image analysis tasks including edge detection, image segmentation, image feature analysis, image classification, object detection, and others. This survey aims to provide a better understanding of evolutionary computer vision (ECV) by discussing the contributions of different approaches and exploring how and why EC is used for CV and image analysis. The applications, challenges, issues, and trends associated to this research field are also discussed and summarised to provide further guidelines and opportunities for future research

A multiple beta wavelet-based locally regularized ultraorthogonal forward regression algorithm for time-varying system identification with applications to EEG

Time-varying (TV) nonlinear systems widely exist in various fields of engineering and science. Effective identification and modeling of TV systems is a challenging problem due to the nonstationarity and nonlinearity of the associated processes. In this paper, a novel parametric modeling algorithm is proposed to deal with this problem based on a TV nonlinear autoregressive with exogenous input (TV-NARX) model. A new class of multiple beta wavelet (MBW) basis functions is introduced to represent the TV coefficients of the TV-NARX model to enable the tracking of both smooth trends and sharp changes of the system behavior. To produce a parsimonious model structure, a locally regularized ultraorthogonal forward regression (LRUOFR) algorithm aided by the adjustable prediction error sum of squares (APRESS) criterion is investigated for sparse model term selection and parameter estimation. Simulation studies and a real application to EEG data show that the proposed MBW-LRUOFR algorithm can effectively capture the global and local features of nonstationary systems and obtain an optimal model, even for signals contaminated with severe colored noise

Noise and morphogenesis: Uncertainty, randomness and control

This thesis presents a processual ontology of noise by virtue of which morphogenesis (in its most general understanding as the processes by which order/form is created) must be instantiated. Noise is here outlined as the far from equilibrium environment out of which metastable temporary ‘solutions’ can emerge as the system transitions through the pre-individual state space. While frequently addressed by humanities and arts studies on the basis of its supposed disruptive character (often in terms of aesthetics), this thesis aims to thoroughly examine noise’s conceptual potencies. To explore and amplify the epistemic consequences not merely of the ineliminability of noise but of its originative power as well as within the course of the elimination of givenness by epistemology. This philosophical work is informed by many different fields of contemporary science (namely: statistical physics, information theory, probability theory, 4E cognition, synthetic biology, nonlinear dynamics, complexity science and computer science) in order to assess and highlight the problems of the metascientific and ideological foundations of diverse projects of prediction and control of uncertainty. From algorithmic surveillance back to cybernetics and how these rendered noise “informationally heretical”. This conveys an analysis of how contemporary prediction technologies are dramatically transforming our relationship with the future and with uncertainty in a great number of our social structures. It is a philosophico-critical anthropology of data ontology and a critique of reductive pan-info-computationalism. Additionally, two practical examples of noise characterised as an enabling constraint for the functioning of complex adaptive systems are presented. These are at once biophysical and cognitive, : 1) interaction-dominance constituted by ‘pink noise’ and 2) noise as a source of variability that cells may exploit in (synthetic) biology. Finally, noise is posited as an intractable active ontological randomness that limits the scope of determinism and that goes beyond unpredictability in any epistemological sense due to the insuperability of the situation in which epistemology finds itself following the critique of the given