Hypergraph Partitioning in the Cloud

The thesis investigates the partitioning and load balancing problem which has many applications in High Performance Computing (HPC). The application to be partitioned is described with a graph or hypergraph. The latter is of greater interest as hypergraphs, compared to graphs, have a more general structure and can be used to model more complex relationships between groups of objects such as non-symmetric dependencies. Optimal graph and hypergraph partitioning is known to be NP-Hard but good polynomial time heuristic algorithms have been proposed. In this thesis, we propose two multi-level hypergraph partitioning algorithms. The algorithms are based on rough set clustering techniques. The first algorithm, which is a serial algorithm, obtains high quality partitionings and improves the partitioning cut by up to 71\% compared to the state-of-the-art serial hypergraph partitioning algorithms. Furthermore, the capacity of serial algorithms is limited due to the rapid growth of problem sizes of distributed applications. Consequently, we also propose a parallel hypergraph partitioning algorithm. Considering the generality of the hypergraph model, designing a parallel algorithm is difficult and the available parallel hypergraph algorithms offer less scalability compared to their graph counterparts. The issue is twofold: the parallel algorithm and the complexity of the hypergraph structure. Our parallel algorithm provides a trade-off between global and local vertex clustering decisions. By employing novel techniques and approaches, our algorithm achieves better scalability than the state-of-the-art parallel hypergraph partitioner in the Zoltan tool on a set of benchmarks, especially ones with irregular structure. Furthermore, recent advances in cloud computing and the services they provide have led to a trend in moving HPC and large scale distributed applications into the cloud. Despite its advantages, some aspects of the cloud, such as limited network resources, present a challenge to running communication-intensive applications and make them non-scalable in the cloud. While hypergraph partitioning is proposed as a solution for decreasing the communication overhead within parallel distributed applications, it can also offer advantages for running these applications in the cloud. The partitioning is usually done as a pre-processing step before running the parallel application. As parallel hypergraph partitioning itself is a communication-intensive operation, running it in the cloud is hard and suffers from poor scalability. The thesis also investigates the scalability of parallel hypergraph partitioning algorithms in the cloud, the challenges they present, and proposes solutions to improve the cost/performance ratio for running the partitioning problem in the cloud. Our algorithms are implemented as a new hypergraph partitioning package within Zoltan. It is an open source Linux-based toolkit for parallel partitioning, load balancing and data-management designed at Sandia National Labs. The algorithms are known as FEHG and PFEHG algorithms

The role of twins in computing planar supports of hypergraphs

A support or realization of a hypergraph $H$ is a graph $G$ on the same vertex as $H$ such that for each hyperedge of $H$ it holds that its vertices induce a connected subgraph of $G$. The NP-hard problem of finding a planar} support has applications in hypergraph drawing and network design. Previous algorithms for the problem assume that twins}---pairs of vertices that are in precisely the same hyperedges---can safely be removed from the input hypergraph. We prove that this assumption is generally wrong, yet that the number of twins necessary for a hypergraph to have a planar support only depends on its number of hyperedges. We give an explicit upper bound on the number of twins necessary for a hypergraph with $m$ hyperedges to have an $r$-outerplanar support, which depends only on $r$ and $m$. Since all additional twins can be safely removed, we obtain a linear-time algorithm for computing $r$-outerplanar supports for hypergraphs with $m$ hyperedges if $m$ and $r$ are constant; in other words, the problem is fixed-parameter linear-time solvable with respect to the parameters $m$ and $r$

Distributed Symmetry Breaking in Hypergraphs

Fundamental local symmetry breaking problems such as Maximal Independent Set (MIS) and coloring have been recognized as important by the community, and studied extensively in (standard) graphs. In particular, fast (i.e., logarithmic run time) randomized algorithms are well-established for MIS and $\Delta +1$-coloring in both the LOCAL and CONGEST distributed computing models. On the other hand, comparatively much less is known on the complexity of distributed symmetry breaking in {\em hypergraphs}. In particular, a key question is whether a fast (randomized) algorithm for MIS exists for hypergraphs. In this paper, we study the distributed complexity of symmetry breaking in hypergraphs by presenting distributed randomized algorithms for a variety of fundamental problems under a natural distributed computing model for hypergraphs. We first show that MIS in hypergraphs (of arbitrary dimension) can be solved in $O(\log^2 n)$ rounds ($n$ is the number of nodes of the hypergraph) in the LOCAL model. We then present a key result of this paper --- an $O(\Delta^{\epsilon}\text{polylog}(n))$-round hypergraph MIS algorithm in the CONGEST model where $\Delta$ is the maximum node degree of the hypergraph and $\epsilon > 0$ is any arbitrarily small constant. To demonstrate the usefulness of hypergraph MIS, we present applications of our hypergraph algorithm to solving problems in (standard) graphs. In particular, the hypergraph MIS yields fast distributed algorithms for the {\em balanced minimal dominating set} problem (left open in Harris et al. [ICALP 2013]) and the {\em minimal connected dominating set problem}. We also present distributed algorithms for coloring, maximal matching, and maximal clique in hypergraphs.Comment: Changes from the previous version: More references adde

Duality of Graphical Models and Tensor Networks

In this article we show the duality between tensor networks and undirected graphical models with discrete variables. We study tensor networks on hypergraphs, which we call tensor hypernetworks. We show that the tensor hypernetwork on a hypergraph exactly corresponds to the graphical model given by the dual hypergraph. We translate various notions under duality. For example, marginalization in a graphical model is dual to contraction in the tensor network. Algorithms also translate under duality. We show that belief propagation corresponds to a known algorithm for tensor network contraction. This article is a reminder that the research areas of graphical models and tensor networks can benefit from interaction

Hypergraph Learning with Line Expansion

Previous hypergraph expansions are solely carried out on either vertex level or hyperedge level, thereby missing the symmetric nature of data co-occurrence, and resulting in information loss. To address the problem, this paper treats vertices and hyperedges equally and proposes a new hypergraph formulation named the \emph{line expansion (LE)} for hypergraphs learning. The new expansion bijectively induces a homogeneous structure from the hypergraph by treating vertex-hyperedge pairs as "line nodes". By reducing the hypergraph to a simple graph, the proposed \emph{line expansion} makes existing graph learning algorithms compatible with the higher-order structure and has been proven as a unifying framework for various hypergraph expansions. We evaluate the proposed line expansion on five hypergraph datasets, the results show that our method beats SOTA baselines by a significant margin

Risk-Averse Matchings over Uncertain Graph Databases

A large number of applications such as querying sensor networks, and analyzing protein-protein interaction (PPI) networks, rely on mining uncertain graph and hypergraph databases. In this work we study the following problem: given an uncertain, weighted (hyper)graph, how can we efficiently find a (hyper)matching with high expected reward, and low risk? This problem naturally arises in the context of several important applications, such as online dating, kidney exchanges, and team formation. We introduce a novel formulation for finding matchings with maximum expected reward and bounded risk under a general model of uncertain weighted (hyper)graphs that we introduce in this work. Our model generalizes probabilistic models used in prior work, and captures both continuous and discrete probability distributions, thus allowing to handle privacy related applications that inject appropriately distributed noise to (hyper)edge weights. Given that our optimization problem is NP-hard, we turn our attention to designing efficient approximation algorithms. For the case of uncertain weighted graphs, we provide a $\frac{1}{3}$-approximation algorithm, and a $\frac{1}{5}$-approximation algorithm with near optimal run time. For the case of uncertain weighted hypergraphs, we provide a $\Omega(\frac{1}{k})$-approximation algorithm, where $k$ is the rank of the hypergraph (i.e., any hyperedge includes at most $k$ nodes), that runs in almost (modulo log factors) linear time. We complement our theoretical results by testing our approximation algorithms on a wide variety of synthetic experiments, where we observe in a controlled setting interesting findings on the trade-off between reward, and risk. We also provide an application of our formulation for providing recommendations of teams that are likely to collaborate, and have high impact.Comment: 25 page