Recommender system to support comprehensive exploration of large scale scientific datasets

Bases de dados de entidades científicas, como compostos químicos, doenças e objetos astronómicos, têm crescido em tamanho e complexidade, chegando a milhares de milhões de itens por base de dados. Os investigadores precisam de ferramentas novas e inovadoras para auxiliar na escolha desses itens. Este trabalho propõe o uso de Sistemas de Recomendação para auxiliar os investigadores a encontrar itens de interesse. Identificamos como um dos maiores desafios para a aplicação de sistemas de recomendação em áreas científicas a falta de conjuntos de dados padronizados e de acesso aberto com informações sobre as preferências dos utilizadores. Para superar esse desafio, desenvolvemos uma metodologia denominada LIBRETTI - Recomendação Baseada em Literatura de Itens Científicos, cujo objetivo é a criação de conjuntos de dados , relacionados com campos científicos. Estes conjuntos de dados são criados com base no principal recurso de conhecimento que a Ciência possui: a literatura científica. A metodologia LIBRETTI permitiu o desenvolvimento de novos algoritmos de recomendação específicos para vários campos científicos. Além do LIBRETTI, as principais contribuições desta tese são conjuntos de dados de recomendação padronizados nas áreas de Astronomia, Química e Saúde (relacionado com a doença COVID-19), um sistema de recomendação semântica híbrido para compostos químicos em conjuntos de dados de grande escala, uma abordagem híbrida baseada no enriquecimento sequencial (SeEn) para recomendações sequenciais, um pipeline baseado em semântica de vários campos para recomendar entidades biomédicas relacionadas com a doença COVID-19.Databases for scientific entities, such as chemical compounds, diseases and astronomical objects, are growing in size and complexity, reaching billions of items per database. Researchers need new and innovative tools for assisting the choice of these items. This work proposes the use of Recommender Systems approaches for helping researchers to find items of interest. We identified as one of the major challenges for applying RS in scientific fields the lack of standard and open-access datasets with information about the preferences of the users. To overcome this challenge, we developed a methodology called LIBRETTI - LIterature Based RecommEndaTion of scienTific Items, whose goal is to create datasets related to scientific fields. These datasets are created based on scientific literature, the major resource of knowledge that Science has. LIBRETTI methodology allowed the development and testing of new recommender algorithms specific for each field. Besides LIBRETTI, the main contributions of this thesis are standard and sequence-aware recommendation datasets in the fields of Astronomy, Chemistry, and Health (related to COVID-19 disease), a hybrid semantic recommender system for chemical compounds in large-scale datasets, a hybrid approach based on sequential enrichment (SeEn) for sequence-aware recommendations, a multi-field semantic-based pipeline for recommending biomedical entities related to COVID-19 disease

A service concept recommendation system for enhancing the dependability of semantic service matchmakers in the service ecosystem environment

A Service Ecosystem is a biological view of the business and software environment, which is comprised of a Service Use Ecosystem and a Service Supply Ecosystem. Service matchmakers play an important role in ensuring the connectivity between the two ecosystems. Current matchmakers attempt to employ ontologies to disambiguate service consumers’ service queries by semantically classifying service entities and providing a series of human computer interactions to service consumers. However, the lack of relevant service domain knowledge and the wrong service queries could prevent the semantic service matchmakers from seeking the service concepts that can be used to correctly represent service requests. To resolve this issue, in this paper, we propose the framework of a service concept recommendation system, which is built upon a semantic similarity model.This system can be employed to seek the concepts used to correctly represent service consumers’ requests, when a semantic service matchmaker finds that the service concepts that are eventually retrieved cannot match the service requests. Whilst many similar semantic similarity models have been developed to date, most of them focus on distance-based measures for the semantic network environment and ignore content-based measures for the ontology environment. For the ontology environment in which concepts are defined with sufficient datatype properties, object properties, and restrictions etc., the content of concepts should be regarded as an important factor in concept similarity measures. Hence, we present a novel semantic similarity model for the service ontology environment. The technical details and evaluation details of the framework are discussed in this paper

BiOSS: A system for biomedical ontology selection

In biomedical informatics, ontologies are considered a key technology for annotating, retrieving and sharing the huge volume of publicly available data. Due to the increasing amount, complexity and variety of existing biomedical ontologies, choosing the ones to be used in a semantic annotation problem or to design a specific application is a difficult task. As a consequence, the design of approaches and tools addressed to facilitate the selection of biomedical ontologies is becoming a priority. In this paper we present BiOSS, a novel system for the selection of biomedical ontologies. BiOSS evaluates the adequacy of an ontology to a given domain according to three different criteria: (1) the extent to which the ontology covers the domain; (2) the semantic richness of the ontology in the domain; (3) the popularity of the ontology in the biomedical community. BiOSS has been applied to 5 representative problems of ontology selection. It also has been compared to existing methods and tools. Results are promising and show the usefulness of BiOSS to solve real-world ontology selection problems. BiOSS is openly available both as a web tool and a web service.Instituto de Salud Carlos III; FIS-PI10/02180Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; CN2012/217Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; CN2011/034Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; CN2012/211Programa Iberoamericano de Ciencia y Tecnología para el Desarrollo; ref. 209RT036

Recommender System Based on Semantic Similarity

In electronic commerce, in order to help users to find their favourite products, we essentially need a system to classify the products based on the user's interests and needs to recommend them to the users. For the same reason the recommendation systems are designed to help finding information in large websites. They are basically developed to offer products to the customers in an automated fashion to help them to do conveniently their shopping. The developing of such systems is important since there are often a large number of factors involved in purchasing a product that would make it difficult for the customer to make the best decision. Finding relationship among users and relationships among products are important issue in these systems. One of relations is similarity. Measure similarity among users and products is used in the pure methods for calculating similarity degree. In this paper, semantic similarity is used to find a set of k nearest neighbours to the target user, or target item. Thus, because of incorporating semantic similarity in the proposed recommendation system, from the experimental results, the high accuracy was obtained on private building company dataset in comparison with state-of-the-art recommender systems.DOI:http://dx.doi.org/10.11591/ijece.v3i6.393

A Survey Paper on Ontology-Based Approaches for Semantic Data Mining

Semantic Data Mining alludes to the information mining assignments that deliberately consolidate area learning, particularly formal semantics, into the procedure. Numerous exploration endeavors have validated the advantages of fusing area learning in information mining and in the meantime, the expansion of information building has enhanced the group of space learning, particularly formal semantics and Semantic Web ontology. Ontology is an explicit specification of conceptualization and a formal approach to characterize the semantics of information and data. The formal structure of ontology makes it a nature approach to encode area information for the information mining utilization. Here in Semantic information mining ontology can possibly help semantic information mining and how formal semantics in ontologies can be joined into the data mining procedure. DOI: 10.17762/ijritcc2321-8169.16048

Exploiting the conceptual space in hybrid recommender systems: a semantic-based approach

Tesis doctoral inédita. Universidad Autónoma de Madrid, Escuela Politécnica Superior, octubre de 200