An Order-based Algorithm for Minimum Dominating Set with Application in Graph Mining

Dominating set is a set of vertices of a graph such that all other vertices have a neighbour in the dominating set. We propose a new order-based randomised local search (RLS$_o$) algorithm to solve minimum dominating set problem in large graphs. Experimental evaluation is presented for multiple types of problem instances. These instances include unit disk graphs, which represent a model of wireless networks, random scale-free networks, as well as samples from two social networks and real-world graphs studied in network science. Our experiments indicate that RLS$_o$ performs better than both a classical greedy approximation algorithm and two metaheuristic algorithms based on ant colony optimisation and local search. The order-based algorithm is able to find small dominating sets for graphs with tens of thousands of vertices. In addition, we propose a multi-start variant of RLS$_o$ that is suitable for solving the minimum weight dominating set problem. The application of RLS$_o$ in graph mining is also briefly demonstrated

On combinatorial optimisation in analysis of protein-protein interaction and protein folding networks

Abstract: Protein-protein interaction networks and protein folding networks represent prominent research topics at the intersection of bioinformatics and network science. In this paper, we present a study of these networks from combinatorial optimisation point of view. Using a combination of classical heuristics and stochastic optimisation techniques, we were able to identify several interesting combinatorial properties of biological networks of the COSIN project. We obtained optimal or near-optimal solutions to maximum clique and chromatic number problems for these networks. We also explore patterns of both non-overlapping and overlapping cliques in these networks. Optimal or near-optimal solutions to partitioning of these networks into non-overlapping cliques and to maximum independent set problem were discovered. Maximal cliques are explored by enumerative techniques. Domination in these networks is briefly studied, too. Applications and extensions of our findings are discussed

The Directed Dominating Set Problem: Generalized Leaf Removal and Belief Propagation

A minimum dominating set for a digraph (directed graph) is a smallest set of vertices such that each vertex either belongs to this set or has at least one parent vertex in this set. We solve this hard combinatorial optimization problem approximately by a local algorithm of generalized leaf removal and by a message-passing algorithm of belief propagation. These algorithms can construct near-optimal dominating sets or even exact minimum dominating sets for random digraphs and also for real-world digraph instances. We further develop a core percolation theory and a replica-symmetric spin glass theory for this problem. Our algorithmic and theoretical results may facilitate applications of dominating sets to various network problems involving directed interactions.Comment: 11 pages, 3 figures in EPS forma

An ACO Algorithm for Effective Cluster Head Selection

This paper presents an effective algorithm for selecting cluster heads in mobile ad hoc networks using ant colony optimization. A cluster in an ad hoc network consists of a cluster head and cluster members which are at one hop away from the cluster head. The cluster head allocates the resources to its cluster members. Clustering in MANET is done to reduce the communication overhead and thereby increase the network performance. A MANET can have many clusters in it. This paper presents an algorithm which is a combination of the four main clustering schemes- the ID based clustering, connectivity based, probability based and the weighted approach. An Ant colony optimization based approach is used to minimize the number of clusters in MANET. This can also be considered as a minimum dominating set problem in graph theory. The algorithm considers various parameters like the number of nodes, the transmission range etc. Experimental results show that the proposed algorithm is an effective methodology for finding out the minimum number of cluster heads.Comment: 7 pages, 5 figures, International Journal of Advances in Information Technology (JAIT); ISSN: 1798-2340; Academy Publishers, Finlan

Hybrid behavioural-based multi-objective space trajectory optimization

In this chapter we present a hybridization of a stochastic based search approach for multi-objective optimization with a deterministic domain decomposition of the solution space. Prior to the presentation of the algorithm we introduce a general formulation of the optimization problem that is suitable to describe both single and multi-objective problems. The stochastic approach, based on behaviorism, combinedwith the decomposition of the solutions pace was tested on a set of standard multi-objective optimization problems and on a simple but representative case of space trajectory design

A hybrid genetic algorithm and inver over approach for the travelling salesman problem

This article posted here with permission of the IEEE - Copyright @ 2010 IEEEThis paper proposes a two-phase hybrid approach for the travelling salesman problem (TSP). The first phase is based on a sequence based genetic algorithm (SBGA) with an embedded local search scheme. Within the SBGA, a memory is introduced to store good sequences (sub-tours) extracted from previous good solutions and the stored sequences are used to guide the generation of offspring via local search during the evolution of the population. Additionally, we also apply some techniques to adapt the key parameters based on whether the best individual of the population improves or not and maintain the diversity. After SBGA finishes, the hybrid approach enters the second phase, where the inver over (IO) operator, which is a state-of-the-art algorithm for the TSP, is used to further improve the solution quality of the population. Experiments are carried out to investigate the performance of the proposed hybrid approach in comparison with several relevant algorithms on a set of benchmark TSP instances. The experimental results show that the proposed hybrid approach is efficient in finding good quality solutions for the test TSPs.This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) of the United Kingdom under Grant EP/E060722/1

Approximate solutions in space mission design

In this paper, we address multi-objective space mission design problems. From a practical point of view, it is often the case that,during the preliminary phase of the design of a space mission, the solutions that are actually considered are not 'optimal' (in the Pareto sense)but belong to the basin of attraction of optimal ones (i.e. they are nearly optimal). This choice is motivated either by additional requirements that the decision maker has to take into account or, more often, by robustness considerations. For this, we suggest a novel MOEA which is a modification of the well-known NSGA-II algorithm equipped with a recently proposed archiving strategy which aims at storing the set of approximate solutions of a given MOP. Using this algorithm we will examine some space trajectory design problems and demonstrate the benefit of the novel approach