Non-convex regularization in remote sensing

In this paper, we study the effect of different regularizers and their implications in high dimensional image classification and sparse linear unmixing. Although kernelization or sparse methods are globally accepted solutions for processing data in high dimensions, we present here a study on the impact of the form of regularization used and its parametrization. We consider regularization via traditional squared (2) and sparsity-promoting (1) norms, as well as more unconventional nonconvex regularizers (p and Log Sum Penalty). We compare their properties and advantages on several classification and linear unmixing tasks and provide advices on the choice of the best regularizer for the problem at hand. Finally, we also provide a fully functional toolbox for the community.Comment: 11 pages, 11 figure

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

Behind the Scenes: On the Relationship Between Developer Experience and Refactoring

Refactoring is widely recognized as one of the efficient techniques to manage technical debt and maintain a healthy software project through enforcing best design practices, or coping with design defects. Previous refactoring surveys have shown that code refactoring activities are mainly executed by developers who have sufficient knowledge of the system’s design, and disposing of leadership roles in their development teams. However, these surveys were mainly limited to specific projects and companies. In this paper, we explore the generalizability of the previous results by analyzing 800 open-source projects. We mine their refactoring activities, and we identify their corresponding contributors. Then, we associate an experience score to each contributor in order to test various hypotheses related to whether developers with higher scores tend to 1) perform a higher number of refactoring operations 2) exhibit different motivations behind their refactoring, and 3) better document their refactoring activity. We found that (1) although refactoring is not restricted to a subset of developers, those with higher contribution score tend to perform more refactorings than others; (2) while there is no correlation between experience and motivation behind refactoring, top contributed developers are found to perform a wider variety of refactoring operations, regardless of their complexity; and (3) top contributed developer tend to document less their refactoring activity. Our qualitative analysis of three randomly sampled projects show that the developers who are responsible for the majority of refactoring activities are typically in advanced positions in their development teams, demonstrating their extensive knowledge of the design of the systems they contribute to

Face Image and Video Analysis in Biometrics and Health Applications

Computer Vision (CV) enables computers and systems to derive meaningful information from acquired visual inputs, such as images and videos, and make decisions based on the extracted information. Its goal is to acquire, process, analyze, and understand the information by developing a theoretical and algorithmic model. Biometrics are distinctive and measurable human characteristics used to label or describe individuals by combining computer vision with knowledge of human physiology (e.g., face, iris, fingerprint) and behavior (e.g., gait, gaze, voice). Face is one of the most informative biometric traits. Many studies have investigated the human face from the perspectives of various different disciplines, ranging from computer vision, deep learning, to neuroscience and biometrics. In this work, we analyze the face characteristics from digital images and videos in the areas of morphing attack and defense, and autism diagnosis. For face morphing attacks generation, we proposed a transformer based generative adversarial network to generate more visually realistic morphing attacks by combining different losses, such as face matching distance, facial landmark based loss, perceptual loss and pixel-wise mean square error. In face morphing attack detection study, we designed a fusion-based few-shot learning (FSL) method to learn discriminative features from face images for few-shot morphing attack detection (FS-MAD), and extend the current binary detection into multiclass classification, namely, few-shot morphing attack fingerprinting (FS-MAF). In the autism diagnosis study, we developed a discriminative few shot learning method to analyze hour-long video data and explored the fusion of facial dynamics for facial trait classification of autism spectrum disorder (ASD) in three severity levels. The results show outstanding performance of the proposed fusion-based few-shot framework on the dataset. Besides, we further explored the possibility of performing face micro- expression spotting and feature analysis on autism video data to classify ASD and control groups. The results indicate the effectiveness of subtle facial expression changes on autism diagnosis

Classification learning of latent bruise damage to apples using shortwave infrared hyperspectral imaging

Bruise damage is a very commonly occurring defect in apple fruit which facilitates disease occurrence and spread, leads to fruit deterioration and can greatly contribute to postharvest loss. The detection of bruises at their earliest stage of development can be advantageous for screening purposes. An experiment to induce soft bruises in Golden Delicious apples was conducted by applying impact energy at different levels, which allowed to investigate the detectability of bruises at their latent stage. The existence of bruises that were rather invisible to the naked eye and to a digital camera was proven by reconstruction of hyperspectral images of bruised apples, based on effective wavelengths and data dimensionality reduced hyperspectrograms. Machine learning classifiers, namely ensemble subspace discriminant (ESD), k-nearest neighbors (KNN), support vector machine (SVM) and linear discriminant analysis (LDA) were used to build models for detecting bruises at their latent stage, to study the influence of time after bruise occurrence on detection performance and to model quantitative aspects of bruises (severity), spanning from latent to visible bruises. Over all classifiers, detection models had a higher performance than quantitative ones. Given its highest speed in prediction and high classification performance, SVM was rated most recommendable for detection tasks