Essential metals at the host-pathogen interface : nutritional immunity and micronutrient assimilation by human fungal pathogens

AC and DW are supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant Number 102549/Z/13/Z).Peer reviewedPublisher PD

Multi-Entity Dependence Learning with Rich Context via Conditional Variational Auto-encoder

Multi-Entity Dependence Learning (MEDL) explores conditional correlations among multiple entities. The availability of rich contextual information requires a nimble learning scheme that tightly integrates with deep neural networks and has the ability to capture correlation structures among exponentially many outcomes. We propose MEDL_CVAE, which encodes a conditional multivariate distribution as a generating process. As a result, the variational lower bound of the joint likelihood can be optimized via a conditional variational auto-encoder and trained end-to-end on GPUs. Our MEDL_CVAE was motivated by two real-world applications in computational sustainability: one studies the spatial correlation among multiple bird species using the eBird data and the other models multi-dimensional landscape composition and human footprint in the Amazon rainforest with satellite images. We show that MEDL_CVAE captures rich dependency structures, scales better than previous methods, and further improves on the joint likelihood taking advantage of very large datasets that are beyond the capacity of previous methods.Comment: The first two authors contribute equall

Controlling Reversibility in Reversing Petri Nets with Application to Wireless Communications

Petri nets are a formalism for modelling and reasoning about the behaviour of distributed systems. Recently, a reversible approach to Petri nets, Reversing Petri Nets (RPN), has been proposed, allowing transitions to be reversed spontaneously in or out of causal order. In this work we propose an approach for controlling the reversal of actions of an RPN, by associating transitions with conditions whose satisfaction/violation allows the execution of transitions in the forward/reversed direction, respectively. We illustrate the framework with a model of a novel, distributed algorithm for antenna selection in distributed antenna arrays.Comment: RC 201

An Automated Social Graph De-anonymization Technique

We present a generic and automated approach to re-identifying nodes in anonymized social networks which enables novel anonymization techniques to be quickly evaluated. It uses machine learning (decision forests) to matching pairs of nodes in disparate anonymized sub-graphs. The technique uncovers artefacts and invariants of any black-box anonymization scheme from a small set of examples. Despite a high degree of automation, classification succeeds with significant true positive rates even when small false positive rates are sought. Our evaluation uses publicly available real world datasets to study the performance of our approach against real-world anonymization strategies, namely the schemes used to protect datasets of The Data for Development (D4D) Challenge. We show that the technique is effective even when only small numbers of samples are used for training. Further, since it detects weaknesses in the black-box anonymization scheme it can re-identify nodes in one social network when trained on another.Comment: 12 page