A comparison of magnetic resonance imaging and neuropsychological examination in the diagnostic distinction of Alzheimer’s disease and behavioral variant frontotemporal dementia

The clinical distinction between Alzheimer's disease (AD) and behavioral variant frontotemporal dementia (bvFTD) remains challenging and largely dependent on the experience of the clinician. This study investigates whether objective machine learning algorithms using supportive neuroimaging and neuropsychological clinical features can aid the distinction between both diseases. Retrospective neuroimaging and neuropsychological data of 166 participants (54 AD; 55 bvFTD; 57 healthy controls) was analyzed via a Naïve Bayes classification model. A subgroup of patients (n = 22) had pathologically-confirmed diagnoses. Results show that a combination of gray matter atrophy and neuropsychological features allowed a correct classification of 61.47% of cases at clinical presentation. More importantly, there was a clear dissociation between imaging and neuropsychological features, with the latter having the greater diagnostic accuracy (respectively 51.38 vs. 62.39%). These findings indicate that, at presentation, machine learning classification of bvFTD and AD is mostly based on cognitive and not imaging features. This clearly highlights the urgent need to develop better biomarkers for both diseases, but also emphasizes the value of machine learning in determining the predictive diagnostic features in neurodegeneration

SubCMap: subject and condition specific effect maps

Current methods for statistical analysis of neuroimaging data identify condition related structural alterations in the human brain by detecting group differences. They construct detailed maps showing population-wide changes due to a condition of interest. Although extremely useful, methods do not provide information on the subject-specific structural alterations and they have limited diagnostic value because group assignments for each subject are required for the analysis. In this article, we propose SubCMap, a novel method to detect subject and condition specific structural alterations. SubCMap is designed to work without the group assignment information in order to provide diagnostic value. Unlike outlier detection methods, SubCMap detections are condition-specific and can be used to study the effects of various conditions or for diagnosing diseases. The method combines techniques from classification, generalization error estimation and image restoration to the identify the condition-related alterations. Experimental evaluation is performed on synthetically generated data as well as data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database. Results on synthetic data demonstrate the advantages of SubCMap compared to population-wide techniques and higher detection accuracy compared to outlier detection. Analysis with the ADNI dataset show that SubCMap detections on cortical thickness data well correlate with non-imaging markers of Alzheimer's Disease (AD), the Mini Mental State Examination Score and Cerebrospinal Fluid amyloid-β levels, suggesting the proposed method well captures the inter-subject variation of AD effects

Automated Extraction of Biomarkers for Alzheimer's Disease from Brain Magnetic Resonance Images

In this work, different techniques for the automated extraction of biomarkers for Alzheimer's disease (AD) from brain magnetic resonance imaging (MRI) are proposed. The described work forms part of PredictAD (www.predictad.eu), a joined European research project aiming at the identification of a unified biomarker for AD combining different clinical and imaging measurements. Two different approaches are followed in this thesis towards the extraction of MRI-based biomarkers: (I) the extraction of traditional morphological biomarkers based on neuronatomical structures and (II) the extraction of data-driven biomarkers applying machine-learning techniques. A novel method for a unified and automated estimation of structural volumes and volume changes is proposed. Furthermore, a new technique that allows the low-dimensional representation of a high-dimensional image population for data analysis and visualization is described. All presented methods are evaluated on images from the Alzheimer's Disease Neuroimaging Initiative (ADNI), providing a large and diverse clinical database. A rigorous evaluation of the power of all identified biomarkers to discriminate between clinical subject groups is presented. In addition, the agreement of automatically derived volumes with reference labels as well as the power of the proposed method to measure changes in a subject's atrophy rate are assessed. The proposed methods compare favorably to state-of-the art techniques in neuroimaging in terms of accuracy, robustness and run-time

Discriminant analysis of intermediate brain atrophy rates in longitudinal diagnosis of alzheimer's disease

Diagnosing Alzheimer's disease through MRI neuroimaging biomarkers has been used as a complementary marker for traditional clinical markers to improve diagnostic accuracy and also help in developing new pharmacotherapeutic trials. It has been revealed that longitudinal analysis of the whole brain atrophy has the power of discriminating Alzheimer's disease and elderly normal controls. In this work, effect of involving intermediate atrophy rates and impact of using uncorrelated principal components of these features instead of original ones on discriminating normal controls and Alzheimer's disease subjects, is inspected. In fact, linear discriminative analysis of atrophy rates is used to classify subjects into Alzheimer's disease and controls. Leave-one-out cross-validation has been adopted to evaluate the generalization rate of the classifier along with its memorization. Results show that incorporating uncorrelated version of intermediate features leads to the same memorization performance as the original ones but higher generalization rate. As a conclusion, it is revealed that in a longitudinal study, using intermediate MRI scans and transferring them to an uncorrelated feature space can improve diagnostic accuracy

An MRI-Derived Definition of MCI-to-AD Conversion for Long-Term, Automati c Prognosis of MCI Patients

Alzheimer's disease (AD) and mild cognitive impairment (MCI), continue to be widely studied. While there is no consensus on whether MCIs actually "convert" to AD, the more important question is not whether MCIs convert, but what is the best such definition. We focus on automatic prognostication, nominally using only a baseline image brain scan, of whether an MCI individual will convert to AD within a multi-year period following the initial clinical visit. This is in fact not a traditional supervised learning problem since, in ADNI, there are no definitive labeled examples of MCI conversion. Prior works have defined MCI subclasses based on whether or not clinical/cognitive scores such as CDR significantly change from baseline. There are concerns with these definitions, however, since e.g. most MCIs (and ADs) do not change from a baseline CDR=0.5, even while physiological changes may be occurring. These works ignore rich phenotypical information in an MCI patient's brain scan and labeled AD and Control examples, in defining conversion. We propose an innovative conversion definition, wherein an MCI patient is declared to be a converter if any of the patient's brain scans (at follow-up visits) are classified "AD" by an (accurately-designed) Control-AD classifier. This novel definition bootstraps the design of a second classifier, specifically trained to predict whether or not MCIs will convert. This second classifier thus predicts whether an AD-Control classifier will predict that a patient has AD. Our results demonstrate this new definition leads not only to much higher prognostic accuracy than by-CDR conversion, but also to subpopulations much more consistent with known AD brain region biomarkers. We also identify key prognostic region biomarkers, essential for accurately discriminating the converter and nonconverter groups

Structural MRI used to predict conversion from mild cognitive impairment to Alzheimer's disease at different rates

BACKGROUND: Early detection of individuals at risk for converting to Alzheimer’s disease (AD) can potentially lead to more efficient treatment and better disease management. A well-known approach has aimed at identifying individuals at the prodromal stage of dementia; namely, Mild Cognitive Impairment (MCI). Past studies showed that MCI subjects often have accelerated rates of conversion to AD, or to other types of dementia compared to healthy controls (HCs). However, with more investigations of the MCI population, it became evident that a high level of heterogeneity exists within this group: many remain clinically stable even after 10 years. MCI subtypes defined by the conventional classification criteria showed inconsistent results for determining an individual's risk of AD. As another approach, neuroimaging techniques such as magnetic resonance imaging (MRI) are able to successfully identify neurological changes during early AD. MRI markers including morphological, connectional and abnormal signal patterns in the brain have been shown to have good sensitivity for classifying AD. Based on these findings, recent studies started implementing these imaging markers to create computer-aided classification models for predicting the risk of conversion to AD. Most of these studies enrolled MCI subjects who remained stable or converted to AD within 3 years, and generated computer-aided classification models to predict conversion using various imaging markers and clinical data. To our knowledge, no classification models proposed achieved an accuracy of higher than 80% for predicting MCI-AD conversion earlier than 3 years with only using structural MRI features. In this paper, we tested the prediction range beyond 3 years, and suggested new candidate imaging measures for earlier prediction. METHODS: The subjects included in the current study are n=51 MCI non-converter, n=157 MCI converter (115 fast converters and 42 slow converters) and n=38 AD, selected from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database. Using subjects' baseline T1-weighted MRI scans, we combined conventional morphometric measures (e.g. cortical thickness, surface area, volume, etc.) with novel intensity measures to differentiate MCI converters from non-converters. We additionally applied a machine learning approach to classify MCI subgroups by combining features in multiple measurement domains. RESULTS: Based on group comparison using independent t-test, we found that while MCI fast converters (conversion within 0-2 years) were highly distinct from MCI non-converters across many cortical and subcortical regions, MCI slow converters (conversion within 3-5 years) demonstrated more focal differences from MCI non-converters mainly in the temporal regions and hippocampal subfields. We identified unique imaging features associated with each converter group and had improved classification performance on both MCI converter groups by adding those markers. The best performing classifiers combined conventional imaging features, novel intensity features and neuropsychological features. For our best performing classification models, we were able to classify MCI fast converters (0-2 years) from non-converter with an average accuracy of 86.1%, sensitivity of 85.5%, and specificity of 89.8%, and to classify MCI slow converters (3-5 years) from non-converters with an accuracy of 80.5%, sensitivity of 75.7%, and specificity of 82.3%. CONCLUSION: Our results demonstrated the potential of the suggested approach for predicting the conversion from MCI to AD at an even earlier time point (3-5 years) before the onset of AD. The combination of standard morphometric features and proposed novel intensity features improved the sensitivity of using T1-weighted MRI for describing the heterogeneity between MCI subgroups

Quantitation in MRI : application to ageing and epilepsy

Multi-atlas propagation and label fusion techniques have recently been developed for segmenting the human brain into multiple anatomical regions. In this thesis, I investigate possible adaptations of these current state-of-the-art methods. The aim is to study ageing on the one hand, and on the other hand temporal lobe epilepsy as an example for a neurological disease. Overall effects are a confounding factor in such anatomical analyses. Intracranial volume (ICV) is often preferred to normalize for global effects as it allows to normalize for estimated maximum brain size and is hence independent of global brain volume loss, as seen in ageing and disease. I describe systematic differences in ICV measures obtained at 1.5T versus 3T, and present an automated method of measuring intracranial volume, Reverse MNI Brain Masking (RBM), based on tissue probability maps in MNI standard space. I show that this is comparable to manual measurements and robust against field strength differences. Correct and robust segmentation of target brains which show gross abnormalities, such as ventriculomegaly, is important for the study of ageing and disease. We achieved this with incorporating tissue classification information into the image registration process. The best results in elderly subjects, patients with TLE and healthy controls were achieved using a new approach using multi-atlas propagation with enhanced registration (MAPER). I then applied MAPER to the problem of automatically distinguishing patients with TLE with (TLE-HA) and without (TLE-N) hippocampal atrophy on MRI from controls, and determine the side of seizure onset. MAPER-derived structural volumes were used for a classification step consisting of selecting a set of discriminatory structures and applying support vector machine on the structural volumes as well as morphological similarity information such as volume difference obtained with spectral analysis. Acccuracies were 91-100 %, indicating that the method might be clinically useful. Finally, I used the methods developed in the previous chapters to investigate brain regional volume changes across the human lifespan in over 500 healthy subjects between 20 to 90 years of age, using data from three different scanners (2x 1.5T, 1x 3T), using the IXI database. We were able to confirm several known changes, indicating the veracity of the method. In addition, we describe the first multi-region, whole-brain database of normal ageing

Computerized tools : a substitute or a supplement when diagnosing Alzheimer's disease?

Alzheimer’s disease (AD) is the most common form of dementia in the elderly characterized by difficulties in memory, disturbances in language, changes in behavior, and impairments in daily life activities. By the time cognitive impairment manifests, substantial synaptic and neuronal degeneration has already occurred. Therefore, patients need to be diagnosed as early as possible at a preclinical or presymptomatic stage. This will be important when disease-modifying treatments exist in the future. The main focus of this thesis is on the study of structural neuroimaging in AD and in prodromal stages of the disease. We emphasize the use of statistical learning for the analysis of structural neuroimaging data to achieve individual prediction of disease status and conversion from prodromal stages. The main aims of the thesis were to develop and validate computerized tools to identify patterns of atrophy with the potential of becoming markers of AD pathology using structural magnetic resonance imaging (sMRI) data and to develop a segmentation tool for Computed Tomography (CT). Using automated neuroanatomical software we measured multiple brain structures that were given to statistical learning techniques to create discriminative models for prediction of presence of disease and conversion from prodromal stages. Building statistical models based on sMRI data we investigated optimal normalization strategies for the combination of structural measures such as cortical thickness, cortical and subcortical volumes (Study I). A baseline model was created based on the optimal normalization strategy and combination of structural measures. This model was used to compare the discrimination ability of different statistical learning algorithms (decision trees, artificial neural networks, support vector machines and orthogonal partial least squares (OPLS)). Additionally, the addition of age, years of education and APOE phenotype was added to the baseline model to assess the impact on discrimination ability (Study II). The OPLS classification algorithm was trained on the baseline model to produce a structural index reflecting information about AD-like patterns of atrophy from each individual’s sMRI data. Additional longitudinal information at one-year follow-up was used to characterize the temporal evolution of the derived index (Study III). Since total intracranial volume (ICV) remains a morphological measure of interest and CT is today widely used in routine clinical investigations, we developed and validated an automated segmentation algorithm to estimate ICV from CT scans (Study IV). We believe computerized tools (automated neuroimaging software and statistical discriminative algorithms) have significantly enriched our knowledge and understanding of associated neurodegenerative pathology, its effects on cognition and interaction with age. These tools were mainly developed for research purposes but we believe all accumulated knowledge and insights could be translated into clinical settings, however, that is a challenge that remains open for future studies

Robust Machine Learning-Based Correction on Automatic Segmentation of the Cerebellum and Brainstem.

Automated segmentation is a useful method for studying large brain structures such as the cerebellum and brainstem. However, automated segmentation may lead to inaccuracy and/or undesirable boundary. The goal of the present study was to investigate whether SegAdapter, a machine learning-based method, is useful for automatically correcting large segmentation errors and disagreement in anatomical definition. We further assessed the robustness of the method in handling size of training set, differences in head coil usage, and amount of brain atrophy. High resolution T1-weighted images were acquired from 30 healthy controls scanned with either an 8-channel or 32-channel head coil. Ten patients, who suffered from brain atrophy because of fragile X-associated tremor/ataxia syndrome, were scanned using the 32-channel head coil. The initial segmentations of the cerebellum and brainstem were generated automatically using Freesurfer. Subsequently, Freesurfer's segmentations were both manually corrected to serve as the gold standard and automatically corrected by SegAdapter. Using only 5 scans in the training set, spatial overlap with manual segmentation in Dice coefficient improved significantly from 0.956 (for Freesurfer segmentation) to 0.978 (for SegAdapter-corrected segmentation) for the cerebellum and from 0.821 to 0.954 for the brainstem. Reducing the training set size to 2 scans only decreased the Dice coefficient ≤0.002 for the cerebellum and ≤ 0.005 for the brainstem compared to the use of training set size of 5 scans in corrective learning. The method was also robust in handling differences between the training set and the test set in head coil usage and the amount of brain atrophy, which reduced spatial overlap only by <0.01. These results suggest that the combination of automated segmentation and corrective learning provides a valuable method for accurate and efficient segmentation of the cerebellum and brainstem, particularly in large-scale neuroimaging studies, and potentially for segmenting other neural regions as well