Extending the PCIe Interface with Parallel Compression/Decompression Hardware for Energy and Performance Optimization

PCIe is a high-performing interface used to move data from a central host PC to an accelerator such as Field Programmable Gate Arrays (FPGA). This interface allows a system to perform fast data transfers in High-Performance Computing (HPC) and provide a performance boost. However, HPC systems normally require large datasets, and in these situations PCIe can become a bottleneck. To address this issue, we propose an open-source hardware compression/decompression system that can be used to adapt with continuously-streamed data with low latency and high throughput. We implement a compressor and decompressor engines on FPGA, scale up with multiple engines working in parallel, and evaluate the energy reduction and performance with different numbers of multiple engines. To alleviate the performance bottleneck in the processor acting as a controller, we propose a hardware scheduler to fairly distribute the datasets among the engines. Our design reduces the transmission time in PCIe, and the results show an energy reduction of up to 48% in the PCIe transfers, thanks to the decrease in the number of bits that have to be transmitted. The overhead in terms of latency is maintained to a minimum and user selectable depending on the tolerances of the intended application

Interconnection Networks for High-Performance Stream Computing with FPGA Clusters

Tohoku University佐野健太郎課

Energy Efficient Parallel K-Means Clustering for an Intel Hybrid Multi-Chip Package

International audienceFPGA devices have been proving to be good candidates to accelerate applications from different research topics. For instance, machine learning applications such as K-Means clustering usually relies on large amount of data to be processed, and, despite the performance offered by other architectures, FPGAs can offer better energy efficiency. With that in mind, Intel ® has launched a platform that integrates a multicore and an FPGA in the same package, enabling low latency and coherent fine-grained data offload. In this paper, we present a parallel implementation of the K-Means clustering algorithm, for this novel platform, using OpenCL language, and compared it against other platforms. We found that the CPU+FPGA platform was more energy efficient than the CPU-only approach from 70.71% to 85.92%, with Standard and Tiny input sizes respectively, and up to 68.21% of performance improvement was obtained with Tiny input size. Furthermore, it was up to 7.2× more energy efficient than an Intel® Xeon Phi ™, 21.5× than a cluster of Raspberry Pi boards, and 3.8× than the low-power MPPA-256 architecture, when the Standard input size was used

Digital FPGA Circuits Design for Real-Time Video Processing with Reference to Two Application Scenarios

In the present days of digital revolution, image and/or video processing has become a ubiquitous task: from mobile devices to special environments, the need for a real-time approach is everyday more and more evident. Whatever the reason, either for user experience in recreational or internet-based applications or for safety related timeliness in hard-real-time scenarios, the exploration of technologies and techniques which allow for this requirement to be satisfied is a crucial point. General purpose CPU or GPU software implementations of these applications are quite simple and widespread, but commonly do not allow high performance because of the high layering that separates high level languages and libraries, which enforce complicated procedures and algorithms, from the base architecture of the CPUs that offers only limited and basic (although rapidly executed) arithmetic operations. The most practised approach nowadays is based on the use of Very-Large-Scale Integrated (VLSI) digital electronic circuits. Field Programmable Gate Arrays (FPGAs) are integrated digital circuits designed to be configured after manufacturing, "on the field". They typically provide lower performance levels when compared to Application Specific Integrated Circuits (ASICs), but at a lower cost, especially when dealing with limited production volumes. Of course, on-the-field programmability itself (and re-programmability, in the vast majority of cases) is also a characteristic feature that makes FPGA more suitable for applications with changing specifications where an update of capabilities may be a desirable benefit. Moreover, the time needed to fulfill the design cycle for FPGA-based circuits (including of course testing and debug speed) is much reduced when compared to the design flow and time-to-market of ASICs. In this thesis work, we will see (Chapter 1) some common problems and strategies involved with the use of FPGAs and FPGA-based systems for Real Time Image Processing and Real Time Video Processing (in the following alsoindicated interchangeably with the acronym RTVP); we will then focus, in particular, on two applications. Firstly, Chapter 2 will cover the implementation of a novel algorithm for Visual Search, known as CDVS, which has been recently standardised as part of the MPEG-7 standard. Visual search is an emerging field in mobile applications which is rapidly becoming ubiquitous. However, typically, algorithms for this kind of applications are connected with a high leverage on computational power and complex elaborations: as a consequence, implementation efficiency is a crucial point, and this generally results in the need for custom designed hardware. Chapter 3 will cover the implementation of an algorithm for the compression of hyperspectral images which is bit-true compatible with the CCSDS-123.0 standard algorithm. Hyperspectral images are three dimensional matrices in which each 2D plane represents the image, as captured by the sensor, in a given spectral band: their size may range from several millions of pixels up to billions of pixels. Typical scenarios of use of hyperspectral images include airborne and satellite-borne remote sensing. As a consequence, major concerns are the limitedness of both processing power and communication links bandwidth: thus, a proper compression algorithm, as well as the efficiency of its implementation, is crucial. In both cases we will first of all examine the scope of the work with reference to current state-of-the-art. We will then see the proposed implementations in their main characteristics and, to conclude, we will consider the primary experimental results

Zynq SoC based acceleration of the lattice Boltzmann method

Cerebral aneurysm is a life‐threatening condition. It is a weakness in a blood vessel that may enlarge and bleed into the surrounding area. In order to understand the surrounding environmental conditions during the interventions or surgical procedures, a simulation of blood flow in cerebral arteries is needed. One of the effective simulation approaches is to use the lattice Boltzmann (LB) method. Due to the computational complexity of the algorithm, the simulation is usually performed on high performance computers. In this paper, efficient hardware architectures of the LB method on a Zynq system‐on‐chip (SoC) are designed and implemented. The proposed architectures have first been simulated in Vivado HLS environment and later implemented on a ZedBoard using the software‐defined SoC (SDSoC) development environment. In addition, a set of evaluations of different hardware architectures of the LB implementation is discussed in this paper. The experimental results show that the proposed implementation is able to accelerate the processing speed by a factor of 52 compared to a dual‐core ARM processor‐based software implementation

Toolflows for Mapping Convolutional Neural Networks on FPGAs: A Survey and Future Directions

In the past decade, Convolutional Neural Networks (CNNs) have demonstrated state-of-the-art performance in various Artificial Intelligence tasks. To accelerate the experimentation and development of CNNs, several software frameworks have been released, primarily targeting power-hungry CPUs and GPUs. In this context, reconfigurable hardware in the form of FPGAs constitutes a potential alternative platform that can be integrated in the existing deep learning ecosystem to provide a tunable balance between performance, power consumption and programmability. In this paper, a survey of the existing CNN-to-FPGA toolflows is presented, comprising a comparative study of their key characteristics which include the supported applications, architectural choices, design space exploration methods and achieved performance. Moreover, major challenges and objectives introduced by the latest trends in CNN algorithmic research are identified and presented. Finally, a uniform evaluation methodology is proposed, aiming at the comprehensive, complete and in-depth evaluation of CNN-to-FPGA toolflows.Comment: Accepted for publication at the ACM Computing Surveys (CSUR) journal, 201

Techniques of design optimisation for algorithms implemented in software

The overarching objective of this thesis was to develop tools for parallelising, optimising, and implementing algorithms on parallel architectures, in particular General Purpose Graphics Processors (GPGPUs). Two projects were chosen from different application areas in which GPGPUs are used: a defence application involving image compression, and a modelling application in bioinformatics (computational immunology). Each project had its own specific objectives, as well as supporting the overall research goal. The defence / image compression project was carried out in collaboration with the Jet Propulsion Laboratories. The specific questions were: to what extent an algorithm designed for bit-serial for the lossless compression of hyperspectral images on-board unmanned vehicles (UAVs) in hardware could be parallelised, whether GPGPUs could be used to implement that algorithm, and whether a software implementation with or without GPGPU acceleration could match the throughput of a dedicated hardware (FPGA) implementation. The dependencies within the algorithm were analysed, and the algorithm parallelised. The algorithm was implemented in software for GPGPU, and optimised. During the optimisation process, profiling revealed less than optimal device utilisation, but no further optimisations resulted in an improvement in speed. The design had hit a local-maximum of performance. Analysis of the arithmetic intensity and data-flow exposed flaws in the standard optimisation metric of kernel occupancy used for GPU optimisation. Redesigning the implementation with revised criteria (fused kernels, lower occupancy, and greater data locality) led to a new implementation with 10x higher throughput. GPGPUs were shown to be viable for on-board implementation of the CCSDS lossless hyperspectral image compression algorithm, exceeding the performance of the hardware reference implementation, and providing sufficient throughput for the next generation of image sensor as well. The second project was carried out in collaboration with biologists at the University of Arizona and involved modelling a complex biological system – VDJ recombination involved in the formation of T-cell receptors (TCRs). Generation of immune receptors (T cell receptor and antibodies) by VDJ recombination is an enormously complex process, which can theoretically synthesize greater than 1018 variants. Originally thought to be a random process, the underlying mechanisms clearly have a non-random nature that preferentially creates a small subset of immune receptors in many individuals. Understanding this bias is a longstanding problem in the field of immunology. Modelling the process of VDJ recombination to determine the number of ways each immune receptor can be synthesized, previously thought to be untenable, is a key first step in determining how this special population is made. The computational tools developed in this thesis have allowed immunologists for the first time to comprehensively test and invalidate a longstanding theory (convergent recombination) for how this special population is created, while generating the data needed to develop novel hypothesis

Técnicas de compresión de imágenes hiperespectrales sobre hardware reconfigurable

Tesis de la Universidad Complutense de Madrid, Facultad de Informática, leída el 18-12-2020Sensors are nowadays in all aspects of human life. When possible, sensors are used remotely. This is less intrusive, avoids interferces in the measuring process, and more convenient for the scientist. One of the most recurrent concerns in the last decades has been sustainability of the planet, and how the changes it is facing can be monitored. Remote sensing of the earth has seen an explosion in activity, with satellites now being launched on a weekly basis to perform remote analysis of the earth, and planes surveying vast areas for closer analysis...Los sensores aparecen hoy en día en todos los aspectos de nuestra vida. Cuando es posible, de manera remota. Esto es menos intrusivo, evita interferencias en el proceso de medida, y además facilita el trabajo científico. Una de las preocupaciones recurrentes en las últimas décadas ha sido la sotenibilidad del planeta, y cómo menitoirzar los cambios a los que se enfrenta. Los estudios remotos de la tierra han visto un gran crecimiento, con satélites lanzados semanalmente para analizar la superficie, y aviones sobrevolando grades áreas para análisis más precisos...Fac. de InformáticaTRUEunpu

FPGA based technical solutions for high throughput data processing and encryption for 5G communication: A review

The field programmable gate array (FPGA) devices are ideal solutions for high-speed processing applications, given their flexibility, parallel processing capability, and power efficiency. In this review paper, at first, an overview of the key applications of FPGA-based platforms in 5G networks/systems is presented, exploiting the improved performances offered by such devices. FPGA-based implementations of cloud radio access network (C-RAN) accelerators, network function virtualization (NFV)-based network slicers, cognitive radio systems, and multiple input multiple output (MIMO) channel characterizers are the main considered applications that can benefit from the high processing rate, power efficiency and flexibility of FPGAs. Furthermore, the implementations of encryption/decryption algorithms by employing the Xilinx Zynq Ultrascale+MPSoC ZCU102 FPGA platform are discussed, and then we introduce our high-speed and lightweight implementation of the well-known AES-128 algorithm, developed on the same FPGA platform, and comparing it with similar solutions already published in the literature. The comparison results indicate that our AES-128 implementation enables efficient hardware usage for a given data-rate (up to 28.16 Gbit/s), resulting in higher efficiency (8.64 Mbps/slice) than other considered solutions. Finally, the applications of the ZCU102 platform for high-speed processing are explored, such as image and signal processing, visual recognition, and hardware resource management

Parallelism and the software-hardware interface in embedded systems

This thesis by publications addresses issues in the architecture and microarchitecture of next generation, high performance streaming Systems-on-Chip through quantifying the most important forms of parallelism in current and emerging embedded system workloads. The work consists of three major research tracks, relating to data level parallelism, thread level parallelism and the software-hardware interface which together reflect the research interests of the author as they have been formed in the last nine years. Published works confirm that parallelism at the data level is widely accepted as the most important performance leverage for the efficient execution of embedded media and telecom applications and has been exploited via a number of approaches the most efficient being vectorlSIMD architectures. A further, complementary and substantial form of parallelism exists at the thread level but this has not been researched to the same extent in the context of embedded workloads. For the efficient execution of such applications, exploitation of both forms of parallelism is of paramount importance. This calls for a new architectural approach in the software-hardware interface as its rigidity, manifested in all desktop-based and the majority of embedded CPU's, directly affects the performance ofvectorized, threaded codes. The author advocates a holistic, mature approach where parallelism is extracted via automatic means while at the same time, the traditionally rigid hardware-software interface is optimized to match the temporal and spatial behaviour of the embedded workload. This ultimate goal calls for the precise study of these forms of parallelism for a number of applications executing on theoretical models such as instruction set simulators and parallel RAM machines as well as the development of highly parametric microarchitectural frameworks to encapSUlate that functionality.EThOS - Electronic Theses Online ServiceGBUnited Kingdo