3,301 research outputs found
Efficient multicore-aware parallelization strategies for iterative stencil computations
Stencil computations consume a major part of runtime in many scientific
simulation codes. As prototypes for this class of algorithms we consider the
iterative Jacobi and Gauss-Seidel smoothers and aim at highly efficient
parallel implementations for cache-based multicore architectures. Temporal
cache blocking is a known advanced optimization technique, which can reduce the
pressure on the memory bus significantly. We apply and refine this optimization
for a recently presented temporal blocking strategy designed to explicitly
utilize multicore characteristics. Especially for the case of Gauss-Seidel
smoothers we show that simultaneous multi-threading (SMT) can yield substantial
performance improvements for our optimized algorithm.Comment: 15 pages, 10 figure
A Second-Order Distributed Trotter-Suzuki Solver with a Hybrid Kernel
The Trotter-Suzuki approximation leads to an efficient algorithm for solving
the time-dependent Schr\"odinger equation. Using existing highly optimized CPU
and GPU kernels, we developed a distributed version of the algorithm that runs
efficiently on a cluster. Our implementation also improves single node
performance, and is able to use multiple GPUs within a node. The scaling is
close to linear using the CPU kernels, whereas the efficiency of GPU kernels
improve with larger matrices. We also introduce a hybrid kernel that
simultaneously uses multicore CPUs and GPUs in a distributed system. This
kernel is shown to be efficient when the matrix size would not fit in the GPU
memory. Larger quantum systems scale especially well with a high number nodes.
The code is available under an open source license.Comment: 11 pages, 10 figure
UPCBLAS : a numerical library for unified parallel C with architecture-aware optimizations
[Abstract] The popularity of Partitioned Global Address Space (PGAS) languages has increased during the last years thanks to their high programmability and performance through an efficient exploitation of data locality, especially on hierarchical architectures like multicore clusters. This PhD Thesis describes UPCBLAS, a parallel library for numerical computation using the PGAS Unified Parallel C (UPC) language. The routines are built on top of sequential BLAS and SparseBLAS functions and exploit the particularities of the PGAS paradigm, taking into account data locality in order to achieve a good performance. However, the growing complexity in computer system hierarchies due to the increase in the number of cores per processor, levels of cache (some of them shared) and the number of processors per node, as well as the high-speed interconnects, demands the use of new optimization techniques and libraries that take advantage of their features. For this reason, this Thesis also presents Servet, a suite of benchmarks focused on detecting a set of parameters with high in uence on the overall performance of multicore systems. UPCBLAS routines use the hardware parameters provided by Servet to implement optimization techniques that improve their performance. The performance of the library has been experimentally evaluated on several multicore supercomputers and compared to message-passing-based parallel numerical libraries, demonstrating good scalability and efficiency. UPCBLAS has also been used to develop more complex numerical codes in order to demonstrate that it is a good alternative to MPI-based libraries for increasing the productivity of numerical application developers
GHOST: Building blocks for high performance sparse linear algebra on heterogeneous systems
While many of the architectural details of future exascale-class high
performance computer systems are still a matter of intense research, there
appears to be a general consensus that they will be strongly heterogeneous,
featuring "standard" as well as "accelerated" resources. Today, such resources
are available as multicore processors, graphics processing units (GPUs), and
other accelerators such as the Intel Xeon Phi. Any software infrastructure that
claims usefulness for such environments must be able to meet their inherent
challenges: massive multi-level parallelism, topology, asynchronicity, and
abstraction. The "General, Hybrid, and Optimized Sparse Toolkit" (GHOST) is a
collection of building blocks that targets algorithms dealing with sparse
matrix representations on current and future large-scale systems. It implements
the "MPI+X" paradigm, has a pure C interface, and provides hybrid-parallel
numerical kernels, intelligent resource management, and truly heterogeneous
parallelism for multicore CPUs, Nvidia GPUs, and the Intel Xeon Phi. We
describe the details of its design with respect to the challenges posed by
modern heterogeneous supercomputers and recent algorithmic developments.
Implementation details which are indispensable for achieving high efficiency
are pointed out and their necessity is justified by performance measurements or
predictions based on performance models. The library code and several
applications are available as open source. We also provide instructions on how
to make use of GHOST in existing software packages, together with a case study
which demonstrates the applicability and performance of GHOST as a component
within a larger software stack.Comment: 32 pages, 11 figure
A Survey of Prediction and Classification Techniques in Multicore Processor Systems
In multicore processor systems, being able to accurately predict the future provides new optimization opportunities, which otherwise could not be exploited. For example, an oracle able to predict a certain application\u27s behavior running on a smart phone could direct the power manager to switch to appropriate dynamic voltage and frequency scaling modes that would guarantee minimum levels of desired performance while saving energy consumption and thereby prolonging battery life. Using predictions enables systems to become proactive rather than continue to operate in a reactive manner. This prediction-based proactive approach has become increasingly popular in the design and optimization of integrated circuits and of multicore processor systems. Prediction transforms from simple forecasting to sophisticated machine learning based prediction and classification that learns from existing data, employs data mining, and predicts future behavior. This can be exploited by novel optimization techniques that can span across all layers of the computing stack. In this survey paper, we present a discussion of the most popular techniques on prediction and classification in the general context of computing systems with emphasis on multicore processors. The paper is far from comprehensive, but, it will help the reader interested in employing prediction in optimization of multicore processor systems
Reducing memory requirements for large size LBM simulations on GPUs
The scientific community in its never-ending road of larger and more efficient computational resources is in need of more efficient implementations that can adapt efficiently on the current parallel platforms. Graphics processing units are an appropriate platform that cover some of these demands. This architecture presents a high performance with a reduced cost and an efficient power consumption. However, the memory capacity in these devices is reduced and so expensive memory transfers are necessary to deal with big problems. Today, the lattice-Boltzmann method (LBM) has positioned as an efficient approach for Computational Fluid Dynamics simulations. Despite this method is particularly amenable to be efficiently parallelized, it is in need of a considerable memory capacity, which is the consequence of a dramatic fall in performance when dealing with large simulations. In this work, we propose some initiatives to minimize such demand of memory, which allows us to execute bigger simulations on the same platform without additional memory transfers, keeping a high performance. In particular, we present 2 new implementations, LBM-Ghost and LBM-Swap, which are deeply analyzed, presenting the pros and cons of each of them.This project was funded by the Spanish Ministry of Economy and Competitiveness (MINECO): BCAM Severo Ochoa accreditation SEV-2013-0323, MTM2013-40824, Computación de Altas Prestaciones VII TIN2015-65316-P, by the Basque Excellence Research Center (BERC 2014-2017) pro-
gram by the Basque Government, and by the Departament d' Innovació, Universitats i Empresa de la Generalitat de Catalunya, under project MPEXPAR: Models de Programació i Entorns d' Execució Paral·lels (2014-SGR-1051). We also thank the support of the computing facilities of Extremadura Research Centre for Advanced Technologies (CETA-CIEMAT) and NVIDIA GPU Research Center program for the provided resources,
as well as the support of NVIDIA through the BSC/UPC NVIDIA GPU Center of Excellence.Peer ReviewedPostprint (author's final draft
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