42,214 research outputs found
Modularity-Based Clustering for Network-Constrained Trajectories
We present a novel clustering approach for moving object trajectories that
are constrained by an underlying road network. The approach builds a similarity
graph based on these trajectories then uses modularity-optimization hiearchical
graph clustering to regroup trajectories with similar profiles. Our
experimental study shows the superiority of the proposed approach over classic
hierarchical clustering and gives a brief insight to visualization of the
clustering results.Comment: 20-th European Symposium on Artificial Neural Networks, Computational
Intelligence and Machine Learning (ESANN 2012), Bruges : Belgium (2012
clustComp, a bioconductor package for the comparison of clustering results
clustComp is an open source Bioconductor package that implements different techniques for the comparison of two gene expression clustering results. These include flat versus flat
and hierarchical versus flat comparisons. The visualization of the similarities is provided by means
of a bipartite graph, whose layout is heuristically optimized. Its flexibility allows a suitable visualization for both small and large datasets.This work was supported by the Ramón Areces Foundation
Graph based gene/protein prediction and clustering over uncertain medical databases.
Clustering over protein or gene data is now a popular issue in biomedical databases. In general, large sets of gene tags are clustered using high computation techniques over gene or protein distributed data. Most of the traditional clustering techniques are based on subspace, hierarchical and partitioning feature extraction. Various clustering techniques have been proposed in the literature with different cluster measures, but their performance is limited due to spatial noise and uncertainty. In this paper, an improved graph-based clustering technique is proposed for the generation of efficient gene or protein clusters over uncertain and noisy data. The proposed graph-based visualization can effectively identify different types of genes or proteins along with relational attributes. Experimental results show that the proposed graph model more effectively clusters complex gene or protein data when compared with conventional clustering approaches
Persistent Homology Guided Force-Directed Graph Layouts
Graphs are commonly used to encode relationships among entities, yet their
abstractness makes them difficult to analyze. Node-link diagrams are popular
for drawing graphs, and force-directed layouts provide a flexible method for
node arrangements that use local relationships in an attempt to reveal the
global shape of the graph. However, clutter and overlap of unrelated structures
can lead to confusing graph visualizations. This paper leverages the persistent
homology features of an undirected graph as derived information for interactive
manipulation of force-directed layouts. We first discuss how to efficiently
extract 0-dimensional persistent homology features from both weighted and
unweighted undirected graphs. We then introduce the interactive persistence
barcode used to manipulate the force-directed graph layout. In particular, the
user adds and removes contracting and repulsing forces generated by the
persistent homology features, eventually selecting the set of persistent
homology features that most improve the layout. Finally, we demonstrate the
utility of our approach across a variety of synthetic and real datasets
Information visualization for DNA microarray data analysis: A critical review
Graphical representation may provide effective means of making sense of the complexity and sheer volume of data produced by DNA microarray experiments that monitor the expression patterns of thousands of genes simultaneously. The ability to use ldquoabstractrdquo graphical representation to draw attention to areas of interest, and more in-depth visualizations to answer focused questions, would enable biologists to move from a large amount of data to particular records they are interested in, and therefore, gain deeper insights in understanding the microarray experiment results. This paper starts by providing some background knowledge of microarray experiments, and then, explains how graphical representation can be applied in general to this problem domain, followed by exploring the role of visualization in gene expression data analysis. Having set the problem scene, the paper then examines various multivariate data visualization techniques that have been applied to microarray data analysis. These techniques are critically reviewed so that the strengths and weaknesses of each technique can be tabulated. Finally, several key problem areas as well as possible solutions to them are discussed as being a source for future work
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