Latent tree models

Latent tree models are graphical models defined on trees, in which only a subset of variables is observed. They were first discussed by Judea Pearl as tree-decomposable distributions to generalise star-decomposable distributions such as the latent class model. Latent tree models, or their submodels, are widely used in: phylogenetic analysis, network tomography, computer vision, causal modeling, and data clustering. They also contain other well-known classes of models like hidden Markov models, Brownian motion tree model, the Ising model on a tree, and many popular models used in phylogenetics. This article offers a concise introduction to the theory of latent tree models. We emphasise the role of tree metrics in the structural description of this model class, in designing learning algorithms, and in understanding fundamental limits of what and when can be learned

The EM Algorithm

The Expectation-Maximization (EM) algorithm is a broadly applicable approach to the iterative computation of maximum likelihood (ML) estimates, useful in a variety of incomplete-data problems. Maximum likelihood estimation and likelihood-based inference are of central importance in statistical theory and data analysis. Maximum likelihood estimation is a general-purpose method with attractive properties. It is the most-often used estimation technique in the frequentist framework; it is also relevant in the Bayesian framework (Chapter III.11). Often Bayesian solutions are justified with the help of likelihoods and maximum likelihood estimates (MLE), and Bayesian solutions are similar to penalized likelihood estimates. Maximum likelihood estimation is an ubiquitous technique and is used extensively in every area where statistical techniques are used. --

Construction of Bayesian Deformable Models via Stochastic Approximation Algorithm: A Convergence Study

The problem of the definition and the estimation of generative models based on deformable templates from raw data is of particular importance for modelling non aligned data affected by various types of geometrical variability. This is especially true in shape modelling in the computer vision community or in probabilistic atlas building for Computational Anatomy (CA). A first coherent statistical framework modelling the geometrical variability as hidden variables has been given by Allassonni\`ere, Amit and Trouv\'e (JRSS 2006). Setting the problem in a Bayesian context they proved the consistency of the MAP estimator and provided a simple iterative deterministic algorithm with an EM flavour leading to some reasonable approximations of the MAP estimator under low noise conditions. In this paper we present a stochastic algorithm for approximating the MAP estimator in the spirit of the SAEM algorithm. We prove its convergence to a critical point of the observed likelihood with an illustration on images of handwritten digits