Activities of the Research Institute for Advanced Computer Science

The Research Institute for Advanced Computer Science (RIACS) was established by the Universities Space Research Association (USRA) at the NASA Ames Research Center (ARC) on June 6, 1983. RIACS is privately operated by USRA, a consortium of universities with research programs in the aerospace sciences, under contract with NASA. The primary mission of RIACS is to provide research and expertise in computer science and scientific computing to support the scientific missions of NASA ARC. The research carried out at RIACS must change its emphasis from year to year in response to NASA ARC's changing needs and technological opportunities. Research at RIACS is currently being done in the following areas: (1) parallel computing; (2) advanced methods for scientific computing; (3) high performance networks; and (4) learning systems. RIACS technical reports are usually preprints of manuscripts that have been submitted to research journals or conference proceedings. A list of these reports for the period January 1, 1994 through December 31, 1994 is in the Reports and Abstracts section of this report

CBR and MBR techniques: review for an application in the emergencies domain

The purpose of this document is to provide an in-depth analysis of current reasoning engine practice and the integration strategies of Case Based Reasoning and Model Based Reasoning that will be used in the design and development of the RIMSAT system. RIMSAT (Remote Intelligent Management Support and Training) is a European Commission funded project designed to: a.. Provide an innovative, 'intelligent', knowledge based solution aimed at improving the quality of critical decisions b.. Enhance the competencies and responsiveness of individuals and organisations involved in highly complex, safety critical incidents - irrespective of their location. In other words, RIMSAT aims to design and implement a decision support system that using Case Base Reasoning as well as Model Base Reasoning technology is applied in the management of emergency situations. This document is part of a deliverable for RIMSAT project, and although it has been done in close contact with the requirements of the project, it provides an overview wide enough for providing a state of the art in integration strategies between CBR and MBR technologies.Postprint (published version

Doctor of Philosophy

dissertationVisualization and exploration of volumetric datasets has been an active area of research for over two decades. During this period, volumetric datasets used by domain users have evolved from univariate to multivariate. The volume datasets are typically explored and classified via transfer function design and visualized using direct volume rendering. To improve classification results and to enable the exploration of multivariate volume datasets, multivariate transfer functions emerge. In this dissertation, we describe our research on multivariate transfer function design. To improve the classification of univariate volumes, various one-dimensional (1D) or two-dimensional (2D) transfer function spaces have been proposed; however, these methods work on only some datasets. We propose a novel transfer function method that provides better classifications by combining different transfer function spaces. Methods have been proposed for exploring multivariate simulations; however, these approaches are not suitable for complex real-world datasets and may be unintuitive for domain users. To this end, we propose a method based on user-selected samples in the spatial domain to make complex multivariate volume data visualization more accessible for domain users. However, this method still requires users to fine-tune transfer functions in parameter space transfer function widgets, which may not be familiar to them. We therefore propose GuideME, a novel slice-guided semiautomatic multivariate volume exploration approach. GuideME provides the user, an easy-to-use, slice-based user interface that suggests the feature boundaries and allows the user to select features via click and drag, and then an optimal transfer function is automatically generated by optimizing a response function. Throughout the exploration process, the user does not need to interact with the parameter views at all. Finally, real-world multivariate volume datasets are also usually of large size, which is larger than the GPU memory and even the main memory of standard work stations. We propose a ray-guided out-of-core, interactive volume rendering and efficient query method to support large and complex multivariate volumes on standard work stations

Improving Real-World Performance of Vision Aided Navigation in a Flight Environment

The motivation of this research is to fuse information from an airborne imaging sensor with information extracted from satellite imagery in order to provide accurate position when GPS is unavailable for an extended duration. A corpus of existing geo-referenced satellite imagery is used to create a key point database. A novel algorithm for recovering coarse pose using by comparing key points extracted from the airborne imagery to the reference database is developed. This coarse position is used to bootstrap a local-area geo-registration algorithm, which provides GPS-level position estimates. This research derives optimizations for existing local-area methods for operation in flight environments

An architecture for recycling intermediates in a column-store

Automatic recycling intermediate results to improve both query response time and throughput is a grand c

注目領域検出のための視覚的注意モデル設計に関する研究

Visual attention is an important mechanism in the human visual system. When human observe images and videos, they usually do not describe all the contents in them. Instead, they tend to talk about the semantically important regions and objects in the images. The human eye is usually attracted by some regions of interest rather than the entire scene. These regions of interest that present the mainly meaningful or semantic content are called saliency region. Visual saliency detection refers to the use of intelligent algorithms to simulate human visual attention mechanism, extract both the low-level features and high-level semantic information and localize the salient object regions in images and videos. The generated saliency map indicates the regions that are likely to attract human attention. As a fundamental problem of image processing and computer vision, visual saliency detection algorithms have been extensively studied by researchers to solve practical tasks, such as image and video compression, image retargeting, object detection, etc. The visual attention mechanism adopted by saliency detection in general are divided into two categories, namely the bottom-up model and top-down model. The bottom-up attention algorithm focuses on utilizing the low-level visual features such as colour and edges to locate the salient objects. While the top-down attention utilizes the supervised learning to detect saliency. In recent years, more and more research tend to design deep neural networks with attention mechanisms to improve the accuracy of saliency detection. The design of deep attention neural network is inspired by human visual attention. The main goal is to enable the network to automatically capture the information that is critical to the target tasks and suppress irrelevant information, shift the attention from focusing on all to local. Currently various domain’s attention has been developed for saliency detection and semantic segmentation, such as the spatial attention module in convolution network, it generates a spatial attention map by utilizing the inter-spatial relationship of features; the channel attention module produces a attention by exploring the inter-channel relationship of features. All these well-designed attentions have been proven to be effective in improving the accuracy of saliency detection. This paper investigates the visual attention mechanism of salient object detection and applies it to digital histopathology image analysis for the detection and classification of breast cancer metastases. As shown in following contents, the main research contents include three parts: First, we studied the semantic attention mechanism and proposed a semantic attention approach to accurately localize the salient objects in complex scenarios. The proposed semantic attention uses Faster-RCNN to capture high-level deep features and replaces the last layer of Faster-RCNN by a FC layer and sigmoid function for visual saliency detection; it calculates proposals' attention probabilities by comparing their feature distances with the possible salient object. The proposed method introduces a re-weighting mechanism to reduce the influence of the complexity background, and a proposal selection mechanism to remove the background noise to obtain objects with accurate shape and contour. The simulation result shows that the semantic attention mechanism is robust to images with complex background due to the consideration of high-level object concept, the algorithm achieved outstanding performance among the salient object detection algorithms in the same period. Second, we designed a deep segmentation network (DSNet) for saliency object prediction. We explored a Pyramidal Attentional ASPP (PA-ASPP) module which can provide pixel level attention. DSNet extracts multi-level features with dilated ResNet-101 and the multiscale contextual information was locally weighted with the proposed PA-ASPP. The pyramid feature aggregation encodes the multi-level features from three different scales. This feature fusion incorporates neighboring scales of context features more precisely to produce better pixel-level attention. Finally, we use a scale-aware selection (SAS) module to locally weight multi-scale contextual features, capture important contexts of ASPP for the accurate and consistent dense prediction. The simulation results demonstrated that the proposed PA-ASPP is effective and can generate more coherent results. Besides, with the SAS, the model can adaptively capture the regions with different scales effectively. Finally, based on previous research on attentional mechanisms, we proposed a novel Deep Regional Metastases Segmentation (DRMS) framework for the detection and classification of breast cancer metastases. As we know, the digitalized whole slide image has high-resolution, usually has gigapixel, however the size of abnormal region is often relatively small, and most of the slide region are normal. The highly trained pathologists usually localize the regions of interest first in the whole slide, then perform precise examination in the selected regions. Even though the process is time-consuming and prone to miss diagnosis. Through observation and analysis, we believe that visual attention should be perfectly suited for the application of digital pathology image analysis. The integrated framework for WSI analysis can capture the granularity and variability of WSI, rich information from multi-grained pathological image. We first utilize the proposed attention mechanism based DSNet to detect the regional metastases in patch-level. Then, adopt the Density-Based Spatial Clustering of Applications with Noise (DBSCAN) to predict the whole metastases from individual slides. Finally, determine patient-level pN-stages by aggregating each individual slide-level prediction. In combination with the above techniques, the framework can make better use of the multi-grained information in histological lymph node section of whole-slice images. Experiments on large-scale clinical datasets (e.g., CAMELYON17) demonstrate that our method delivers advanced performance and provides consistent and accurate metastasis detection