ECG beat classification using a cost sensitive classifier

In this paper, we introduce a new system for ECG beat classification using Support Vector Machines (SVMs) classifier with rejection. After ECG preprocessing, the QRS complexes are detected and segmented. A set of features including frequency information, RR intervals, QRS morphology and AC power of QRS detail coefficients is exploited to characterize each beat. An SVM follows to classify the feature vectors. Our decision rule uses dynamic reject thresholds following the cost of misclassifying a sample and the cost of rejecting a sample. Significant performance enhancement is observed when the proposed approach is tested with the MIT-BIH arrhythmia database. The achieved results are represented by the average accuracy of 97.2% with no rejection and 98.8% for the minimal classification cost

Biometric authentication and identification through electrocardiogram signals

Tese de Mestrado Integrado, Engenharia Biomédica e Biofísica (Engenharia Clínica e Instrumentação Médica), 2021, Universidade de Lisboa, Faculdade de CiênciasO reconhecimento biométrico tem sido alvo de diversas investigações ao longo dos anos, sendo a impressão digital, a face e a iris, os traços biométricos mais explorados. Apesar do seu elevado potencial no que diz respeito a possíveis aplicações tecnológicas, alguns estudos apresentam limitações a estes traços biométricos, nomeadamente a falta de fiabilidade e praticidade num sistema biométrico. Recentemente, vários estudos exploraram o potencial do uso do electrocardiograma (ECG) como traço biométrico, por ser único e singular para cada indivíduo, e dificilmente roubado por outrem, por ser um sinal fisiológico. Nesta dissertação, foi investigada a possibilidade de usar sinais ECG como traço biométrico para sistemas de identificação e autenticação biométrica. Para tal, recorreu-se a uma base de dados pública chamada Check Your Biosignals Here initiative (CYBHi), criada com o intuito de propiciar investigações biométricas. As sessões de aquisição contaram com 63 participantes e ocorreram em dois momentos distintos separados por três meses, numa modalidade “off-the-person”, com recurso a um elétrodo na palma da mão e eletrolicras nos dedos. Os sinais da primeira aquisição correspondem, num sistema biométrico, aos dados armazenados na base de dados, enquanto que os sinais da segunda aquisição correspondem aos dados que serão identificados ou autenticados pelo sistema. Os sistemas de identificação e autenticação biométrica propostos nesta dissertação incluem diferentes fases: o pré-processamento, o processamento e a classificação. O pré-processamento consistiu na aplicação de um filtro passa-banda IIR de 4ª ordem, para eliminar ruídos e artefactos provenientes de atividade muscular e da impedância elétrica dos aparelhos de aquisição. A fase de processamento consistiu em extrair e gerar os templates biométricos, que serão os inputs dos algoritmos de classificação. Primeiramente, extraíram-se os ciclos cardíacos através do Neurokit2 disponível no Python. Para tal, foram localizados os picos R dos sinais ECG e, posteriormente, estes foram segmentados em ciclos cardíacos, com 200 amostras antes e 400 amostras depois dos picos. Com o objetivo de remover os segmentos mais ruidosos, os ciclos cardíacos foram submetidos a um algoritmo de eliminação de segmentos que consistiu em encontrar, para cada sujeito, os 20 e 60 ciclos mais próximos entre si, designados de Set 1 e Set 2, respetivamente. A partir desses dois conjuntos de ciclos, criaram-se dois tipos de templates: 1) os ciclos cardíacos, e 2) escalogramas gerados a partir dos ciclos, através da transformada de wavelet contínua, com dois tamanhos distintos: 56x56 e 224x224, denominados por Size 56 e Size 224, respetivamente. Devido ao elevado tamanho dos escalogramas, foi utilizada a analise de componentes independentes para reduzir a dimensionalidade. Assim, os sistemas biométricos propostos na presente investigação, foram testados com os conjuntos de 20 e 60 templates, quer para ciclos quer para escalogramas, de forma a avaliar o desempenho do sistema quando usados mais ou menos templates para os processos de identificação e autenticação. Os templates foram também testados com e sem normalização, para que pudessem ser analisados os benefícios deste processo. A classificação foi feita através de diferentes métodos, testados numa modalidade “entre-sessões”, isto é, os dados da 2ª aquisição, considerados os dados de teste, foram comparados com os dados da 1ª aquisição, denominados dados de treino, de forma a serem classificados. Quanto ao sistema de identificação com ciclos cardíacos, foram testados diferentes classificadores, nomeadamente LDA, kNN, DT e SVM. Para o kNN e SVM, foi feita uma otimização para encontrar o valor de “k” e os valores de γ e C, respetivamente, que permitem o sistema alcançar o melhor desempenho possível. A melhor performance foi obtida através do LDA, alcançando uma taxa de identificação de 79,37% para a melhor configuração, isto é, usando 60 ciclos normalizados. Os templates com base em escalogramas foram testados como inputs para dois métodos distintos: 1) redes neuronais e 2) algoritmo baseado em distâncias. A melhor performance foi uma taxa de identificação de 69,84%, obtida quando usados 60 escalogramas de tamanho 224, não normalizados. Deste modo, os resultados relativos a identificação provaram que utilizar mais templates (60) para identificar um indivíduo otimiza a performance do sistema biométrico, independentemente do tipo de template utilizado. Para alem disto, a normalização mostrou-se um processo essencial para a identificação com ciclos cardíacos, contudo, tal não se verificou para escalogramas. Neste estudo, demonstrou-se que a utilização de ciclos tem mais potencial para tornar um sistema de identificação biométrica eficiente, do que a utilização de escalogramas. No que diz respeito ao sistema de autenticação biométrica, foi utilizado um algoritmo baseado em distâncias, testado com os dois tipos de templates numa configuração concatenada, isto é, uma configuração na qual cada sujeito e representado por um sinal que contém uma sequência de todos os seus templates, seguidos uns dos outros. A avaliação da performance do sistema foi feita com base nos valores de taxa de autenticação e taxa de impostores, que indicam o número de indivíduos corretamente autenticados face ao número total de indivíduos, e o número de impostores autenticados face ao número total de indivíduos, respetivamente. Os ciclos cardíacos foram testados com e sem redução de dimensionalidade, sendo que a melhor performance foi obtida usando 60 ciclos não normalizados sem redução de dimensionalidade. Para esta configuração, obteve-se uma taxa de autenticação de 90,48% e uma taxa de impostores de 13,06%. Desta forma, concluiu-se que reduzir a dimensionalidade dos ciclos cardíacos prejudica o desempenho do sistema, uma vez que se perdem algumas características indispensáveis para a distinção entre sujeitos. Para os escalogramas, a melhor configuração, que corresponde ao uso de 60 escalogramas normalizados de tamanho 56, atingiu uma taxa de autenticação de 98,42% e uma taxa de impostores de 14,34%. Sendo que a dimensionalidade dos escalogramas foi reduzida com recurso a ICA, foi ainda avaliada a performance do sistema quando reduzido o número de componentes independentes. Os resultados mostraram que um número de componentes igual ao número de sujeitos otimiza o desempenho do sistema, uma vez que se verificou um decréscimo da taxa de autenticação quando reduzido o número de componentes. Assim, concluiu-se que são necessárias 63 componentes independentes para distinguir corretamente os 63 sujeitos. Para a autenticação através de ciclos cardíacos, a normalização e a redução de dimensionalidade são dois processos que degradam a performance do sistema, enquanto que, quando utilizados escalogramas, a normalização e vantajosa. Os resultados obtidos provaram ainda que, contrariamente ao que acontece para processos de identificação, a utilização de escalogramas e uma abordagem mais eficiente e eficaz para a autenticação de indivíduos, do que a utilização de ciclos. Esta investigação comprovou o potencial do ECG enquanto traço biométrico para identificação e autenticação de indivíduos, fazendo uma análise comparativa entre diferentes templates extraídos dos sinais ECG e diferentes metodologias na fase de classificação, e avaliando o desempenho do sistema em cada uma das configurações testadas. Estudos anteriores apresentaram algumas limitações, nomeadamente, o uso de aquisições “on-the-person”, ˜ que apresentam pouco potencial para serem integradas em sistemas biométricos devido à baixa praticidade, e à classificação numa modalidade “intra-sessão”, na qual os dados classificados e os dados armazenados foram adquiridos numa só sessão. Este estudo preenche essas lacunas, visto que utilizou dados adquiridos “off-the-person”, dados esses que foram testados numa modalidade “entre-sessões”. Apesar das aquisições ˜ “off-the-person” estarem sujeitas a mais ruídos e, consequentemente, dificultarem processos de identificação ou autenticação, estas abordagens são as mais adequadas para sistemas biométricos, dada a sua possível integração nas mais diversas aplicações tecnológicas. A modalidade “entre-sessões” resulta também numa pior performance relativamente a utilização de sinais de uma só sessão. No entanto, permite comprovar a estabilidade do ECG ao longo do tempo, o que é um fator indispensável para o funcionamento adequado de um sistema biométrico, uma vez que o mesmo terá que comparar diversas vezes o ECG apresentado no momento de identificação ou autenticação, com o ECG armazenado uma única vez na base de dados. Apesar dos bons resultados apresentados nesta dissertação, no futuro devem ser exploradas bases de dados que contenham mais participantes, com uma faixa etária mais alargada, incluindo participantes com diversas condições de saúde, com aquisições separadas por um período de tempo mais longo, de forma a simular o melhor possível a realidade de um sistema biométrico.Biometrics is a rapidly growing field with applications in personal identification and authentication. Over the recent years, several studies have demonstrated the potential of Electrocardiogram (ECG) to be used as a physiological signature for biometric systems. In this dissertation, the possibility of using the ECG signal as an unequivocal biometric trait for identification and authentication purposes has been presented. The ECG data used was from a publicly available database, the Check Your Biosignals Here initiative (CHBYi) database, developed for biometric purposes, containing records of 63 participants. Data was collected through an off-the-person approach, in two different moments, separated by three months, resulting in two acquisitions per subject. Signals from the first acquisition represent, in a biometric system, the data stored in the database, whereas signals from the second acquisition represent the data to be authenticated or identified. The proposed identification and authentication systems included several steps: signal pre-processing, signal processing, and classification. In the pre-processing phase, signals were filtered in order to remove noises, while the signal processing consisted of extracting and generating the biometric templates. For that, firstly, the cardiac cycles were extracted from the ECG signals, and segment elimination was performed to find the segments more similar to one another, resulting in two sets of templates, with 20 and 60 templates per participant, respectively. After that, two types of templates were generated: 1) templates based on cardiac cycles, and 2) templates based on scalograms generated from the cardiac cycles, with two different sizes, 56x56 and 224x224. Due to the large size of the scalograms, ICA was applied to reduce their dimensionality. Thus, the biometric systems were evaluated with two sets of each type of template in order to analyze the advantages of using more or fewer templates per subject, and the templates were also tested with and without normalization. For the identification system using cardiac cycles, LDA, kNN, DT, and SVM were tested as classifiers in an “across-session” modality, reaching an accuracy of 79.37% for the best model (LDA) in the best configuration (60 normalized cardiac cycles). When using scalograms, two different methodologies were tested: 1) neural network, and 2) a distance-based algorithm. The best accuracy was 69.84% for 60 not-normalized scalograms of Size 224, using NN. Thus, results suggested that the templates based on cardiac cycles are a more promising approach for identification tasks. For the authentication, a distance-based algorithm was used for both templates. Cardiac cycles were tested with and without dimensionality reduction, and the best configuration (60 not-normalized cardiac cycles without dimensionality reduction) reached an accuracy of 90.48% and an impostor score of 13.06%. For the scalograms, the best configuration (60 normalized scalograms of Size 56) reached an accuracy of 98.42% and an impostor score of 14.34%. Therefore, using scalograms for the authentication task proved to be a more efficient and accurate approach. The results from this work support the claim that ECG-based biometrics can be successfully used for personal identification and authentication. This study brings novelty by exploring different templates and methodologies in order to perform a comparative analysis and find the approaches that optimize the performance of the biometric system. Moreover, this represents a step forward towards a real-world application of an ECG-based biometric system, mainly due to the use of data from off-the-person acquisitions in an across-session modality

Preserving the Quality of Architectural Tactics in Source Code

In any complex software system, strong interdependencies exist between requirements and software architecture. Requirements drive architectural choices while also being constrained by the existing architecture and by what is economically feasible. This makes it advisable to concurrently specify the requirements, to devise and compare alternative architectural design solutions, and ultimately to make a series of design decisions in order to satisfy each of the quality concerns. Unfortunately, anecdotal evidence has shown that architectural knowledge tends to be tacit in nature, stored in the heads of people, and lost over time. Therefore, developers often lack comprehensive knowledge of underlying architectural design decisions and inadvertently degrade the quality of the architecture while performing maintenance activities. In practice, this problem can be addressed through preserving the relationships between the requirements, architectural design decisions and their implementations in the source code, and then using this information to keep developers aware of critical architectural aspects of the code. This dissertation presents a novel approach that utilizes machine learning techniques to recover and preserve the relationships between architecturally significant requirements, architectural decisions and their realizations in the implemented code. Our approach for recovering architectural decisions includes the two primary stages of training and classification. In the first stage, the classifier is trained using code snippets of different architectural decisions collected from various software systems. During this phase, the classifier learns the terms that developers typically use to implement each architectural decision. These ``indicator terms\u27\u27 represent method names, variable names, comments, or the development APIs that developers inevitably use to implement various architectural decisions. A probabilistic weight is then computed for each potential indicator term with respect to each type of architectural decision. The weight estimates how strongly an indicator term represents a specific architectural tactics/decisions. For example, a term such as \emph{pulse} is highly representative of the heartbeat tactic but occurs infrequently in the authentication. After learning the indicator terms, the classifier can compute the likelihood that any given source file implements a specific architectural decision. The classifier was evaluated through several different experiments including classical cross-validation over code snippets of 50 open source projects and on the entire source code of a large scale software system. Results showed that classifier can reliably recognize a wide range of architectural decisions. The technique introduced in this dissertation is used to develop the Archie tool suite. Archie is a plug-in for Eclipse and is designed to detect wide range of architectural design decisions in the code and to protect them from potential degradation during maintenance activities. It has several features for performing change impact analysis of architectural concerns at both the code and design level and proactively keep developers informed of underlying architectural decisions during maintenance activities. Archie is at the stage of technology transfer at the US Department of Homeland Security where it is purely used to detect and monitor security choices. Furthermore, this outcome is integrated into the Department of Homeland Security\u27s Software Assurance Market Place (SWAMP) to advance research and development of secure software systems

A Survey Study of the Current Challenges and Opportunities of Deploying the ECG Biometric Authentication Method in IoT and 5G Environments

The environment prototype of the Internet of Things (IoT) has opened the horizon for researchers to utilize such environments in deploying useful new techniques and methods in different fields and areas. The deployment process takes place when numerous IoT devices are utilized in the implementation phase for new techniques and methods. With the wide use of IoT devices in our daily lives in many fields, personal identification is becoming increasingly important for our society. This survey aims to demonstrate various aspects related to the implementation of biometric authentication in healthcare monitoring systems based on acquiring vital ECG signals via designated wearable devices that are compatible with 5G technology. The nature of ECG signals and current ongoing research related to ECG authentication are investigated in this survey along with the factors that may affect the signal acquisition process. In addition, the survey addresses the psycho-physiological factors that pose a challenge to the usage of ECG signals as a biometric trait in biometric authentication systems along with other challenges that must be addressed and resolved in any future related research.

Free-text keystroke dynamics authentication with a reduced need for training and language independency

This research aims to overcome the drawback of the large amount of training data required for free-text keystroke dynamics authentication. A new key-pairing method, which is based on the keyboard’s key-layout, has been suggested to achieve that. The method extracts several timing features from specific key-pairs. The level of similarity between a user’s profile data and his or her test data is then used to decide whether the test data was provided by the genuine user. The key-pairing technique was developed to use the smallest amount of training data in the best way possible which reduces the requirement for typing long text in the training stage. In addition, non-conventional features were also defined and extracted from the input stream typed by the user in order to understand more of the users typing behaviours. This helps the system to assemble a better idea about the user’s identity from the smallest amount of training data. Non-conventional features compute the average of users performing certain actions when typing a whole piece of text. Results were obtained from the tests conducted on each of the key-pair timing features and the non-conventional features, separately. An FAR of 0.013, 0.0104 and an FRR of 0.384, 0.25 were produced by the timing features and non-conventional features, respectively. Moreover, the fusion of these two feature sets was utilized to enhance the error rates. The feature-level fusion thrived to reduce the error rates to an FAR of 0.00896 and an FRR of 0.215 whilst decision-level fusion succeeded in achieving zero FAR and FRR. In addition, keystroke dynamics research suffers from the fact that almost all text included in the studies is typed in English. Nevertheless, the key-pairing method has the advantage of being language-independent. This allows for it to be applied on text typed in other languages. In this research, the key-pairing method was applied to text in Arabic. The results produced from the test conducted on Arabic text were similar to those produced from English text. This proves the applicability of the key-pairing method on a language other than English even if that language has a completely different alphabet and characteristics. Moreover, experimenting with texts in English and Arabic produced results showing a direct relation between the users’ familiarity with the language and the performance of the authentication system

Uncertainty Quantification in Machine Learning for Biosignal Applications -- A Review

Uncertainty Quantification (UQ) has gained traction in an attempt to fix the black-box nature of Deep Learning. Specifically (medical) biosignals such as electroencephalography (EEG), electrocardiography (ECG), electroocculography (EOG) and electromyography (EMG) could benefit from good UQ, since these suffer from a poor signal to noise ratio, and good human interpretability is pivotal for medical applications and Brain Computer Interfaces. In this paper, we review the state of the art at the intersection of Uncertainty Quantification and Biosignal with Machine Learning. We present various methods, shortcomings, uncertainty measures and theoretical frameworks that currently exist in this application domain. Overall it can be concluded that promising UQ methods are available, but that research is needed on how people and systems may interact with an uncertainty model in a (clinical) environment

Signal processing and machine learning techniques for Doppler ultrasound haemodynamic measurements

Haemodynamic monitoring is an invaluable tool for evaluating, diagnosing and treating the cardiovascular system, and is an integral component of intensive care units, obstetrics wards and other medical units. Doppler ultrasound provides a non-invasive, cost-effective and fast means of haemodynamic monitoring, which traditionally necessitates highly invasive methods such as Pulmonary artery catheter or transoesophageal echocardiography. However, Doppler ultrasound scan acquisition requires a highly experienced operator and can be very challenging. Machine learning solutions that quantify and guide the scanning process in an automatic and intelligent manner could overcome these limitations and lead to routine monitoring. Development of such methods is the primary goal of the presented work. In response to this goal, this thesis proposes a suite of signal processing and machine learning techniques. Among these is a new and real-time method of maximum frequency envelope estimation. This method, which is based on image-processing techniques and is highly adaptive to varying signal quality, was developed to facilitate automatic and consistent extraction of features from Doppler ultrasound measurements. Through a thorough evaluation, this method was demonstrated to be accurate and more stable than alternative state-of-art methods. Two novel real-time methods of beat segmentation, which operate using the maximum frequency envelope, were developed to enable systematic feature extraction from individual cardiac cycles. These methods do not require any additional hardware, such as an electrocardiogram machine, and are fully automatic, real-time and highly resilient to noise. These qualities are not available in existing methods. Extensive evaluation demonstrated the methods to be highly successful. A host of machine learning solutions were analysed, designed and evaluated. This led to a set of novel features being proposed for Doppler ultrasound analysis. In addition, a state of- the-art image recognition classification method, hitherto undocumented for Doppler ultrasound analysis, was shown to be superior to more traditional modelling approaches. These contributions facilitated the design of two innovative types of feedback. To reflect beneficial probe movements, which are otherwise difficult to distinguish, a regression model to quantitatively score ultrasound measurements was proposed. This feedback was shown to be highly correlated with an ideal response. The second type of feedback explicitly predicted beneficial probe movements. This was achieved using classification models with up to five categories, giving a more challenging scenario than those addressed in prior disease classification work. Evaluation of these, for the first time, demonstrated that Doppler scan information can be used to automatically indicate probe position. Overall, the presented work includes significant contributions for Doppler ultrasound analysis, it proposes valuable new machine learning techniques, and with continued work, could lead to solutions that unlock the full potential of Doppler ultrasound haemodynamic monitoring