Heart Beat Characterization from Ballistocardiogram Signals using Extended Functions of Multiple Instances

A multiple instance learning (MIL) method, extended Function of Multiple Instances ($e$FUMI), is applied to ballistocardiogram (BCG) signals produced by a hydraulic bed sensor. The goal of this approach is to learn a personalized heartbeat "concept" for an individual. This heartbeat concept is a prototype (or "signature") that characterizes the heartbeat pattern for an individual in ballistocardiogram data. The $e$FUMI method models the problem of learning a heartbeat concept from a BCG signal as a MIL problem. This approach elegantly addresses the uncertainty inherent in a BCG signal e. g., misalignment between training data and ground truth, mis-collection of heartbeat by some transducers, etc. Given a BCG training signal coupled with a ground truth signal (e.g., a pulse finger sensor), training "bags" labeled with only binary labels denoting if a training bag contains a heartbeat signal or not can be generated. Then, using these bags, $e$FUMI learns a personalized concept of heartbeat for a subject as well as several non-heartbeat background concepts. After learning the heartbeat concept, heartbeat detection and heart rate estimation can be applied to test data. Experimental results show that the estimated heartbeat concept found by $e$FUMI is more representative and a more discriminative prototype of the heartbeat signals than those found by comparison MIL methods in the literature.Comment: IEEE EMBC 2016, pp. 1-

Data-driven methods for analyzing ballistocardiograms in longitudinal cardiovascular monitoring

Cardiovascular disease (CVD) is the leading cause of death in the US; about 48% of American adults have one or more types of CVD. The importance of continuous monitoring of the older population, for early detection of changes in health conditions, has been shown in the literature, as the key to a successful clinical intervention. We have been investigating environmentally-embedded in-home networks of non-invasive sensing modalities. This dissertation concentrates on the signal processing techniques required for the robust extraction of morphological features from the ballistocardiographs (BCG), and machine learning approaches to utilize these features in non-invasive monitoring of cardiovascular conditions. At first, enhancements in the time domain detection of the cardiac cycle are addressed due to its importance in the estimation of heart rate variability (HRV) and sleep stages. The proposed enhancements in the energy-based algorithm for BCG beat detection have shown at least 50% improvement in the root mean square error (RMSE) of the beat to beat heart rate estimations compared to the reference estimations from the electrocardiogram (ECG) R to R intervals. These results are still subject to some errors, primarily due to the contamination of noise and motion artifacts caused by floor vibration, unconstrained subject movements, or even the respiratory activities. Aging, diseases, breathing, and sleep disorders can also affect the quality of estimation as they slightly modify the morphology of the BCG waveform.Includes bibliographical reference

Target concept learning from ambiguously labeled data

The multiple instance learning problem addresses the case where training data comes with label ambiguity, i.e., the learner has access only to inaccurately labeled data. For example, in target detection from remotely sensed hyperspectral imagery, targets are usually sub-pixel and the ground truthing of the targets according to GPS coordinates could drift across several meters. Thus the locations of the targets corresponding to the hyperspectral image are inaccurate. Training a supervised algorithm or extracting target signatures from this kind of labels is intractable. This dissertation investigates the topic target concept learning from ambiguously labeled data comprehensively; reviews and proposes several methods that either learn a set of representative or discriminative target concepts. The multiple instance hybrid estimator (MI-HE) maximizes the response of the hybrid detector under a generalized mean framework and estimates a set of discriminative target concepts. MI-HE adopts a linear mixture model and iterates between estimating a set of discriminative target and non-target signatures and solving a sparse unmixing problem. MI-HE preserves bag-level label information for each positive bag and is able to estimate a target concept that is commonly shared among positive bags. Furthermore, MI-HE has the potential to learn multiple signatures to address signature variability. After learning target concept, signature based detector could be applied for target detection. The presented algorithms were tested in many applications including simulated and real hyperspectral target detection, heartbeat characterization from ballistocardiogram signals and tree species classification from remotely sensed data. The presented algorithms were proven to be effective in learning high-quality target signatures and consistently achieved superior performance over the state-of-the-art comparison algorithms.Includes biblographical reference

Continuous Cardiorespiratory Monitoring Using Ballistocardiography From Load Cells Embedded in a Hospital Bed

The objective of this research is to explore signal processing and machine learning techniques to allow continuous monitoring of cardiorespiratory parameters using the ballistocardiogram (BCG) signals recorded with sensors embedded in a hospital bed. First, the heart rate (HR) estimation algorithms were presented. The first is signal processing-based HR estimation with array processing for multi-channel combination. The second uses a deep learning (DL) model that transforms BCG signals into an interpretable triangular waveform, from which heartbeat locations can be estimated. Second part of the work focuses on estimating respiratory rate (RR) and respiratory volume (RV) using the respiration waveforms derived from the low-frequency components of the load cell signals. Lastly, this work presents two models for blood pressure (BP) estimation -- 1) Conventional pulse transit time (PTT)-based model and 2) DL-based model, both using multi-channel BCG and the photoplethysmogram (PPG) signals to extract features. Overall, this work established methods to enable non-invasive and continuous monitoring of standard vital signs utilizing the sensors already embedded in commonly-deployed commercially available hospital beds. Such technologies could potentially improve the continuous assessment of the patients' physiologic state without adding an extra burden on the caregivers.Ph.D

Vauvojen unen luokittelu patja-sensorilla ja EKG:lla

Infants spend the majority of their time asleep. Although extensive studies have been carried out, the role of sleep for infant cognitive, psychomotor, temperament and developmental outcomes is not clear. The current contradictory results may be due to the limited precision when monitoring infant sleep for prolonged periods of time, from weeks to even months. Sleep-wake cycle can be assessed with sleep questionnaires and actigraphy, but they cannot separate sleep stages. The gold standard for sleep state annotation is polysomnography (PSG), which consist of several signal modalities such as electroencephalogram, electrooculogram, electrocardiogram (ECG), electromyogram, respiration sensor and pulse oximetry. A sleep clinician manually assigns sleep stages for 30 sec epochs based on the visual observation of these signals. Because method is obtrusive and laborious it is not suitable for monitoring long periods. There is, therefore, a need for an automatic and unobtrusive sleep staging approach. In this work, a set of classifiers for infant sleep staging was created and evaluated. The cardiorespiratory and gross body movement signals were used as an input. The different classifiers aim to distinguish between two or more different sleep states. The classifiers were built on a clinical sleep polysomnography data set of 48 infants with ages ranging from 1 week to 18 weeks old (a median of 5 weeks). Respiration and gross body movements were observed using an electromechanical film bed mattress sensor manufactured by Emfit Ltd. ECG of the PSG setup was used for extracting cardiac activity. Signals were preprocessed to remove artefacts and an extensive set of features (N=81) were extracted on which the classifiers were trained. The NREM3 vs other states classifier provided the most accurate results. The median accuracy was 0.822 (IQR: 0.724-0.914). This is comparable to previously published studies on other sleep classifiers, as well as to the level of clinical interrater agreement. Classification methods were confounded by the lack of muscle atonia and amount of gross body movements in REM sleep. The proposed method could be readily applied for home monitoring, as well as for monitoring in neonatal intensive care units.Vauvat nukkuvat suurimman osan vuorokaudesta. Vaikkakin laajasti on tutkittu unen vaikutusta lapsen kognitioon, psykomotoriikkaan, temperamenttiin ja kehitykseen, selkeää kuvaa ja yhtenäistä konsensusta tiedeyhteisössä ei ole saavutettu. Yksi syy tähän on että ei ole olemassa menetelmää, joka soveltuisi jatkuva-aikaiseen ja pitkäkestoiseen unitilan monitorointiin. Vauvojen uni-valve- sykliä voidaan selvittää vanhemmille suunnatuilla kyselyillä ja aktigrafialla, mutta näillä ei voi havaita unitilojen rakennetta. Kliinisenä standardina unitilojen seurannassa on polysomnografia, jossa samanaikaisesti mitataan mm. potilaan elektroenkelografiaa, elektro-okulografiaa, elektrokardiografiaa, electromyografiaa, hengitysinduktiivisesta pletysmografiaa, happisaturaatiota ja hengitysvirtauksia. Kliinikko suorittaa univaiheluokittelun signaaleista näkyvien, vaiheille tyypillisten, hahmojen perusteella. Työläyden ja häiritsevän mittausasetelman takia menetelmä ei sovellu pitkäaikaiseen seurantaan. On tarvetta kehittää tarkoitukseen sopivia automaattisia ja huomaamattomia unenseurantamenetelmiä. Tässä työssä kehitettiin ja testattiin sydämen syke-, hengitys ja liikeanalyysiin perustuvia koneluokittimia vauvojen unitilojen havainnointiin. Luokittimet opetettiin kliinisessa polysomnografiassa kerätyllä datalla 48 vauvasta, joiden ikä vaihteli 1. viikosta 18. viikkoon (mediaani 5 viikkoa). Vauvojen hengitystä ja liikkeitä seurattiin Emfit Oy:n valmistamalla elektromekaaniseen filmiin pohjatuvalla patja-sensorilla. Lisäksi ECG:lla seurattiin sydäntä ja opetuksessa käytettiin lääkärin suorittamaa PSG-pohjaista luokitusta. Esikäsittelyn jälkeen signaaleista laskettiin suuri joukko piirrevektoreita (N=81), joihin luokittelu perustuu. NREM3-univaiheen tunnistus onnistui parhaiten 0.822 mediaani-tarkkuudella ja [0.724,0.914] kvartaaleilla. Tulos on yhtenevä kirjallisuudessa esitettyjen arvojen kanssa ja vastaa kliinikkojen välistä toistettavuutta. Muilla luokittimilla univaiheet sekoituivat keskenään, mikä on oletattavasti selitettävissä aikuisista poikeavalla REM-unen aikaisella lihasjäykkyydellä ja kehon liikkeillä. Työ osoittaa, että menetelmällä voi seurata vauvojen uniluokkien oskillaatiota. Järjestelmää voisi käyttää kotiseurannassa tai vastasyntyneiden teholla unenvalvontaan

Multichannel Ballistocardiography Based on Virtual Bioinstrumentation

Tato diplomová práce se zabývá zpracováním signálu pořízeného pomocí vícekanálové balistokardiografie. Balistokardiografie je metoda snímání pohybů provázejících kontrakci myokardu a rozšíření arterií v důsledku vypuzení krve. V rešeršní části práce jsou popsány metody snímání a zpracování BKG signálu a jeho využití v různých aplikacích. Studie byla provedena naměřením signálů skupiny dobrovolníků v laboratorních podmínkách. Naměřené signály byly zpracovávány pomocí diskrétní vlnkové transformace a Hilbertovy transformace. Byla také představena metoda detekce J vln v balistokardiografickém signálu na základě rozhodovacích procesů. Z tepových frekvencí byla vykreslována křivka variability srdečního rytmu. Všechny výstupy práce byly statisticky analyzovány porovnáváním se zlatým standardem – EKG.This diploma thesis deals with the processing of a signal acquired using multichannel ballistocardiography. Ballistocardiography is a method of sensing the movements that accompany myocardial contraction and dilation of arteries due to blood expulsion. The research part of the thesis describes the methods of sensing and processing the BCG signal and its use in various applications. The study was performed by measuring the signals of a group of volunteers in a laboratory setting. The measured signals were processed using discrete wavelet transform and Hilbert transform. A method of detecting J waves in a ballistocardiographic signal based on decision-making processes was also introduced. The heart rate variability waveform was then plotted from the heart rates. All outputs of the thesis were statistically analyzed by comparison with the gold standard – ECG.450 - Katedra kybernetiky a biomedicínského inženýrstvívýborn

Wearable and Nearable Biosensors and Systems for Healthcare

Biosensors and systems in the form of wearables and “nearables” (i.e., everyday sensorized objects with transmitting capabilities such as smartphones) are rapidly evolving for use in healthcare. Unlike conventional approaches, these technologies can enable seamless or on-demand physiological monitoring, anytime and anywhere. Such monitoring can help transform healthcare from the current reactive, one-size-fits-all, hospital-centered approach into a future proactive, personalized, decentralized structure. Wearable and nearable biosensors and systems have been made possible through integrated innovations in sensor design, electronics, data transmission, power management, and signal processing. Although much progress has been made in this field, many open challenges for the scientific community remain, especially for those applications requiring high accuracy. This book contains the 12 papers that constituted a recent Special Issue of Sensors sharing the same title. The aim of the initiative was to provide a collection of state-of-the-art investigations on wearables and nearables, in order to stimulate technological advances and the use of the technology to benefit healthcare. The topics covered by the book offer both depth and breadth pertaining to wearable and nearable technology. They include new biosensors and data transmission techniques, studies on accelerometers, signal processing, and cardiovascular monitoring, clinical applications, and validation of commercial devices

Strategies for neural networks in ballistocardiography with a view towards hardware implementation

A thesis submitted for the degree of Doctor of Philosophy at the University of LutonThe work described in this thesis is based on the results of a clinical trial conducted by the research team at the Medical Informatics Unit of the University of Cambridge, which show that the Ballistocardiogram (BCG) has prognostic value in detecting impaired left ventricular function before it becomes clinically overt as myocardial infarction leading to sudden death. The objective of this study is to develop and demonstrate a framework for realising an on-line BCG signal classification model in a portable device that would have the potential to find pathological signs as early as possible for home health care. Two new on-line automatic BeG classification models for time domain BeG classification are proposed. Both systems are based on a two stage process: input feature extraction followed by a neural classifier. One system uses a principal component analysis neural network, and the other a discrete wavelet transform, to reduce the input dimensionality. Results of the classification, dimensionality reduction, and comparison are presented. It is indicated that the combined wavelet transform and MLP system has a more reliable performance than the combined neural networks system, in situations where the data available to determine the network parameters is limited. Moreover, the wavelet transfonn requires no prior knowledge of the statistical distribution of data samples and the computation complexity and training time are reduced. Overall, a methodology for realising an automatic BeG classification system for a portable instrument is presented. A fully paralJel neural network design for a low cost platform using field programmable gate arrays (Xilinx's XC4000 series) is explored. This addresses the potential speed requirements in the biomedical signal processing field. It also demonstrates a flexible hardware design approach so that an instrument's parameters can be updated as data expands with time. To reduce the hardware design complexity and to increase the system performance, a hybrid learning algorithm using random optimisation and the backpropagation rule is developed to achieve an efficient weight update mechanism in low weight precision learning. The simulation results show that the hybrid learning algorithm is effective in solving the network paralysis problem and the convergence is much faster than by the standard backpropagation rule. The hidden and output layer nodes have been mapped on Xilinx FPGAs with automatic placement and routing tools. The static time analysis results suggests that the proposed network implementation could generate 2.7 billion connections per second performance