Exact Mean Computation in Dynamic Time Warping Spaces

Dynamic time warping constitutes a major tool for analyzing time series. In particular, computing a mean series of a given sample of series in dynamic time warping spaces (by minimizing the Fr\'echet function) is a challenging computational problem, so far solved by several heuristic and inexact strategies. We spot some inaccuracies in the literature on exact mean computation in dynamic time warping spaces. Our contributions comprise an exact dynamic program computing a mean (useful for benchmarking and evaluating known heuristics). Based on this dynamic program, we empirically study properties like uniqueness and length of a mean. Moreover, experimental evaluations reveal substantial deficits of state-of-the-art heuristics in terms of their output quality. We also give an exact polynomial-time algorithm for the special case of binary time series

Faster Binary Mean Computation Under Dynamic Time Warping

Many consensus string problems are based on Hamming distance. We replace Hamming distance by the more flexible (e.g., easily coping with different input string lengths) dynamic time warping distance, best known from applications in time series mining. Doing so, we study the problem of finding a mean string that minimizes the sum of (squared) dynamic time warping distances to a given set of input strings. While this problem is known to be NP-hard (even for strings over a three-element alphabet), we address the binary alphabet case which is known to be polynomial-time solvable. We significantly improve on a previously known algorithm in terms of worst-case running time. Moreover, we also show the practical usefulness of one of our algorithms in experiments with real-world and synthetic data. Finally, we identify special cases solvable in linear time (e.g., finding a mean of only two binary input strings) and report some empirical findings concerning combinatorial properties of optimal means

Making the Dynamic Time Warping Distance Warping-Invariant

The literature postulates that the dynamic time warping (dtw) distance can cope with temporal variations but stores and processes time series in a form as if the dtw-distance cannot cope with such variations. To address this inconsistency, we first show that the dtw-distance is not warping-invariant. The lack of warping-invariance contributes to the inconsistency mentioned above and to a strange behavior. To eliminate these peculiarities, we convert the dtw-distance to a warping-invariant semi-metric, called time-warp-invariant (twi) distance. Empirical results suggest that the error rates of the twi and dtw nearest-neighbor classifier are practically equivalent in a Bayesian sense. However, the twi-distance requires less storage and computation time than the dtw-distance for a broad range of problems. These results challenge the current practice of applying the dtw-distance in nearest-neighbor classification and suggest the proposed twi-distance as a more efficient and consistent option.Comment: arXiv admin note: substantial text overlap with arXiv:1808.0996