Advancements on SEFE and Partitioned Book Embedding Problems

In this work we investigate the complexity of some problems related to the {\em Simultaneous Embedding with Fixed Edges} (SEFE) of $k$ planar graphs and the PARTITIONED $k$-PAGE BOOK EMBEDDING (PBE-$k$) problems, which are known to be equivalent under certain conditions. While the computational complexity of SEFE for $k=2$ is still a central open question in Graph Drawing, the problem is NP-complete for $k \geq 3$ [Gassner {\em et al.}, WG '06], even if the intersection graph is the same for each pair of graphs ({\em sunflower intersection}) [Schaefer, JGAA (2013)]. We improve on these results by proving that SEFE with $k \geq 3$ and sunflower intersection is NP-complete even when the intersection graph is a tree and all the input graphs are biconnected. Also, we prove NP-completeness for $k \geq 3$ of problem PBE-$k$ and of problem PARTITIONED T-COHERENT $k$-PAGE BOOK EMBEDDING (PTBE-$k$) - that is the generalization of PBE-$k$ in which the ordering of the vertices on the spine is constrained by a tree $T$ - even when two input graphs are biconnected. Further, we provide a linear-time algorithm for PTBE-$k$ when $k-1$ pages are assigned a connected graph. Finally, we prove that the problem of maximizing the number of edges that are drawn the same in a SEFE of two graphs is NP-complete in several restricted settings ({\em optimization version of SEFE}, Open Problem $9$, Chapter $11$ of the Handbook of Graph Drawing and Visualization).Comment: 29 pages, 10 figures, extended version of 'On Some NP-complete SEFE Problems' (Eighth International Workshop on Algorithms and Computation, 2014

An Interactive Tool to Explore and Improve the Ply Number of Drawings

Given a straight-line drawing $\Gamma$ of a graph $G=(V,E)$, for every vertex $v$ the ply disk $D_v$ is defined as a disk centered at $v$ where the radius of the disk is half the length of the longest edge incident to $v$. The ply number of a given drawing is defined as the maximum number of overlapping disks at some point in $\mathbb{R}^2$. Here we present a tool to explore and evaluate the ply number for graphs with instant visual feedback for the user. We evaluate our methods in comparison to an existing ply computation by De Luca et al. [WALCOM'17]. We are able to reduce the computation time from seconds to milliseconds for given drawings and thereby contribute to further research on the ply topic by providing an efficient tool to examine graphs extensively by user interaction as well as some automatic features to reduce the ply number.Comment: Appears in the Proceedings of the 25th International Symposium on Graph Drawing and Network Visualization (GD 2017

GraphCombEx: A Software Tool for Exploration of Combinatorial Optimisation Properties of Large Graphs

We present a prototype of a software tool for exploration of multiple combinatorial optimisation problems in large real-world and synthetic complex networks. Our tool, called GraphCombEx (an acronym of Graph Combinatorial Explorer), provides a unified framework for scalable computation and presentation of high-quality suboptimal solutions and bounds for a number of widely studied combinatorial optimisation problems. Efficient representation and applicability to large-scale graphs and complex networks are particularly considered in its design. The problems currently supported include maximum clique, graph colouring, maximum independent set, minimum vertex clique covering, minimum dominating set, as well as the longest simple cycle problem. Suboptimal solutions and intervals for optimal objective values are estimated using scalable heuristics. The tool is designed with extensibility in mind, with the view of further problems and both new fast and high-performance heuristics to be added in the future. GraphCombEx has already been successfully used as a support tool in a number of recent research studies using combinatorial optimisation to analyse complex networks, indicating its promise as a research software tool

Drawing Big Graphs using Spectral Sparsification

Spectral sparsification is a general technique developed by Spielman et al. to reduce the number of edges in a graph while retaining its structural properties. We investigate the use of spectral sparsification to produce good visual representations of big graphs. We evaluate spectral sparsification approaches on real-world and synthetic graphs. We show that spectral sparsifiers are more effective than random edge sampling. Our results lead to guidelines for using spectral sparsification in big graph visualization.Comment: Appears in the Proceedings of the 25th International Symposium on Graph Drawing and Network Visualization (GD 2017

Visualizing Co-Phylogenetic Reconciliations

We introduce a hybrid metaphor for the visualization of the reconciliations of co-phylogenetic trees, that are mappings among the nodes of two trees. The typical application is the visualization of the co-evolution of hosts and parasites in biology. Our strategy combines a space-filling and a node-link approach. Differently from traditional methods, it guarantees an unambiguous and `downward' representation whenever the reconciliation is time-consistent (i.e., meaningful). We address the problem of the minimization of the number of crossings in the representation, by giving a characterization of planar instances and by establishing the complexity of the problem. Finally, we propose heuristics for computing representations with few crossings.Comment: This paper appears in the Proceedings of the 25th International Symposium on Graph Drawing and Network Visualization (GD 2017

Planar Drawings of Fixed-Mobile Bigraphs

A fixed-mobile bigraph G is a bipartite graph such that the vertices of one partition set are given with fixed positions in the plane and the mobile vertices of the other part, together with the edges, must be added to the drawing. We assume that G is planar and study the problem of finding, for a given k >= 0, a planar poly-line drawing of G with at most k bends per edge. In the most general case, we show NP-hardness. For k=0 and under additional constraints on the positions of the fixed or mobile vertices, we either prove that the problem is polynomial-time solvable or prove that it belongs to NP. Finally, we present a polynomial-time testing algorithm for a certain type of "layered" 1-bend drawings