GRID RESOURCE REGISTRY – ABSTRACT LAYER FOR COMPUTATIONAL RESOURCES

The growing number of resources available to researchers in the e-Science domain has openednew possibilities for constructing complex scientific applications while at the same timeintroducing new requirements for tools which assist developers in creating such applications.This paper discusses the problems of rapid application development, the use of distributedresources and a uniform approach to resource registration, discovery and access. It presentsthe Grid Resource Registry, which delivers an abstract layer for computational resources.The Registry is a central place where developers may search for available services and fromwhich the execution engine receives technical specifications of services. The Registry is usedthroughout the lifetime of the e-science application, starting with application design, throughimplementation to execution

OGSA first impressions: a case study re-engineering a scientific applicationwith the open grid services architecture

We present a case study of our experience re-engineeringa scientific application using the Open Grid Services Architecture(OGSA), a new specification for developing Gridapplications using web service technologies such as WSDLand SOAP. During the last decade, UCL?s Chemistry departmenthas developed a computational approach for predictingthe crystal structures of small molecules. However,each search involves running large iterations of computationallyexpensive calculations and currently takes a fewmonths to perform. Making use of early implementationsof the OGSA specification we have wrapped the Fortranbinaries into OGSI-compliant service interfaces to exposethe existing scientific application as a set of loosely coupledweb services. We show how the OGSA implementationfacilitates the distribution of such applications across alarge network, radically improving performance of the systemthrough parallel CPU capacity, coordinated resourcemanagement and automation of the computational process.We discuss the difficulties that we encountered turning Fortranexecutables into OGSA services and delivering a robust,scalable system. One unusual aspect of our approachis the way we transfer input and output data for the Fortrancodes. Instead of employing a file transfer service wetransform the XML encoded data in the SOAP message tonative file format, where possible using XSLT stylesheets.We also discuss a computational workflow service that enablesusers to distribute and manage parts of the computationalprocess across different clusters and administrativedomains. We examine how our experience re-engineeringthe polymorph prediction application led to this approachand to what extent our efforts have succeeded

Towards Developing Grid-based Portals for E-Commerce on-Demand Services on a Utility Computing Platform

Trends and current practices in the design and development of grid-enabled portals(GeP) reveal the need to identify and fulfill certain additional relevant requirements in order to build applicable and usable grid-enabled portals for evolving computing platforms such as the utility computing (UC). This paper reports an investigation of the minimum relevant additional requirements that must be fulfilled to attain effective GeP design for UC. A GeP prototype for the Grid-based Utility Infrastructure for Small, Micro, and Medium Enterprises (SMME) Enabling Technology (GUISET) initiative – a UC platform was developed, and an analytic evaluation experiment undertaken in the study to elicit these additional requirements using a set of benchmark requirements (standards) revealed that it fulfilled the minimum requirements to be suitable for UC context. The result of the study underlines the need for more controlled experiments in portal prototyping in order to foster the practice of GeP design for UC

Collaborative e-science architecture for Reaction Kinetics research community

This paper presents a novel collaborative e-science architecture (CeSA) to address two challenging issues in e-science that arise from the management of heterogeneous distributed environments: (i) how to provide individual scientists an integrated environment to collaborate with each other in distributed, loosely coupled research communities where each member might be using a disparate range of tools; and (ii) how to provide easy access to a range of computationally intensive resources from a desktop. The Reaction Kinetics research community was used to capture the requirements and in the evaluation of the proposed architecture. The result demonstrated the feasibility of the approach and the potential benefits of the CeSA

GRIDCC: Real-time workflow system

The Grid is a concept which allows the sharing of resources between distributed communities, allowing each to progress towards potentially different goals. As adoption of the Grid increases so are the activities that people wish to conduct through it. The GRIDCC project is a European Union funded project addressing the issues of integrating instruments into the Grid. This increases the requirement of workflows and Quality of Service upon these workflows as many of these instruments have real-time requirements. In this paper we present the workflow management service within the GRIDCC project which is tasked with optimising the workflows and ensuring that they meet the pre-defined QoS requirements specified upon them

Towards a virtual research environment for paediatric endocrinology across Europe

Paediatric endocrinology is a medical specialty dealing with variations of physical growth and sexual development in childhood. Genetic anomalies that can cause disorders of sexual development in children are rare. Given this, sharing and collaboration on the small number of cases that occur is needed by clinical experts in the field. The EU-funded EuroDSD project (www.eurodsd.eu) is one such collaboration involving clinical centres and clinical and genetic experts across Europe. Through the establishment of a virtual research environment (VRE) supporting sharing of data and a variety of clinical and bioinformatics analysis tools, EuroDSD aims to provide a research infrastructure for research into disorders of sex development. Security, ethics and information governance are at the heart of this infrastructure. This paper describes the infrastructure that is being built and the inherent challenges in security, availability and dependability that must be overcome for the enterprise to succeed