38,243 research outputs found
Robust Group Linkage
We study the problem of group linkage: linking records that refer to entities
in the same group. Applications for group linkage include finding businesses in
the same chain, finding conference attendees from the same affiliation, finding
players from the same team, etc. Group linkage faces challenges not present for
traditional record linkage. First, although different members in the same group
can share some similar global values of an attribute, they represent different
entities so can also have distinct local values for the same or different
attributes, requiring a high tolerance for value diversity. Second, groups can
be huge (with tens of thousands of records), requiring high scalability even
after using good blocking strategies.
We present a two-stage algorithm: the first stage identifies cores containing
records that are very likely to belong to the same group, while being robust to
possible erroneous values; the second stage collects strong evidence from the
cores and leverages it for merging more records into the same group, while
being tolerant to differences in local values of an attribute. Experimental
results show the high effectiveness and efficiency of our algorithm on various
real-world data sets
Local multiresolution order in community detection
Community detection algorithms attempt to find the best clusters of nodes in
an arbitrary complex network. Multi-scale ("multiresolution") community
detection extends the problem to identify the best network scale(s) for these
clusters. The latter task is generally accomplished by analyzing community
stability simultaneously for all clusters in the network. In the current work,
we extend this general approach to define local multiresolution methods, which
enable the extraction of well-defined local communities even if the global
community structure is vaguely defined in an average sense. Toward this end, we
propose measures analogous to variation of information and normalized mutual
information that are used to quantitatively identify the best resolution(s) at
the community level based on correlations between clusters in
independently-solved systems. We demonstrate our method on two constructed
networks as well as a real network and draw inferences about local community
strength. Our approach is independent of the applied community detection
algorithm save for the inherent requirement that the method be able to identify
communities across different network scales, with appropriate changes to
account for how different resolutions are evaluated or defined in a particular
community detection method. It should, in principle, easily adapt to
alternative community comparison measures.Comment: 19 pages, 11 figure
Partition Decoupling for Multi-gene Analysis of Gene Expression Profiling Data
We present the extention and application of a new unsupervised statistical
learning technique--the Partition Decoupling Method--to gene expression data.
Because it has the ability to reveal non-linear and non-convex geometries
present in the data, the PDM is an improvement over typical gene expression
analysis algorithms, permitting a multi-gene analysis that can reveal
phenotypic differences even when the individual genes do not exhibit
differential expression. Here, we apply the PDM to publicly-available gene
expression data sets, and demonstrate that we are able to identify cell types
and treatments with higher accuracy than is obtained through other approaches.
By applying it in a pathway-by-pathway fashion, we demonstrate how the PDM may
be used to find sets of mechanistically-related genes that discriminate
phenotypes.Comment: Revise
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