6,905 research outputs found
Graph kernels between point clouds
Point clouds are sets of points in two or three dimensions. Most kernel
methods for learning on sets of points have not yet dealt with the specific
geometrical invariances and practical constraints associated with point clouds
in computer vision and graphics. In this paper, we present extensions of graph
kernels for point clouds, which allow to use kernel methods for such ob jects
as shapes, line drawings, or any three-dimensional point clouds. In order to
design rich and numerically efficient kernels with as few free parameters as
possible, we use kernels between covariance matrices and their factorizations
on graphical models. We derive polynomial time dynamic programming recursions
and present applications to recognition of handwritten digits and Chinese
characters from few training examples
Mining Point Cloud Local Structures by Kernel Correlation and Graph Pooling
Unlike on images, semantic learning on 3D point clouds using a deep network
is challenging due to the naturally unordered data structure. Among existing
works, PointNet has achieved promising results by directly learning on point
sets. However, it does not take full advantage of a point's local neighborhood
that contains fine-grained structural information which turns out to be helpful
towards better semantic learning. In this regard, we present two new operations
to improve PointNet with a more efficient exploitation of local structures. The
first one focuses on local 3D geometric structures. In analogy to a convolution
kernel for images, we define a point-set kernel as a set of learnable 3D points
that jointly respond to a set of neighboring data points according to their
geometric affinities measured by kernel correlation, adapted from a similar
technique for point cloud registration. The second one exploits local
high-dimensional feature structures by recursive feature aggregation on a
nearest-neighbor-graph computed from 3D positions. Experiments show that our
network can efficiently capture local information and robustly achieve better
performances on major datasets. Our code is available at
http://www.merl.com/research/license#KCNetComment: Accepted in CVPR'18. *indicates equal contributio
Identification of functionally related enzymes by learning-to-rank methods
Enzyme sequences and structures are routinely used in the biological sciences
as queries to search for functionally related enzymes in online databases. To
this end, one usually departs from some notion of similarity, comparing two
enzymes by looking for correspondences in their sequences, structures or
surfaces. For a given query, the search operation results in a ranking of the
enzymes in the database, from very similar to dissimilar enzymes, while
information about the biological function of annotated database enzymes is
ignored.
In this work we show that rankings of that kind can be substantially improved
by applying kernel-based learning algorithms. This approach enables the
detection of statistical dependencies between similarities of the active cleft
and the biological function of annotated enzymes. This is in contrast to
search-based approaches, which do not take annotated training data into
account. Similarity measures based on the active cleft are known to outperform
sequence-based or structure-based measures under certain conditions. We
consider the Enzyme Commission (EC) classification hierarchy for obtaining
annotated enzymes during the training phase. The results of a set of sizeable
experiments indicate a consistent and significant improvement for a set of
similarity measures that exploit information about small cavities in the
surface of enzymes
Propagation Kernels
We introduce propagation kernels, a general graph-kernel framework for
efficiently measuring the similarity of structured data. Propagation kernels
are based on monitoring how information spreads through a set of given graphs.
They leverage early-stage distributions from propagation schemes such as random
walks to capture structural information encoded in node labels, attributes, and
edge information. This has two benefits. First, off-the-shelf propagation
schemes can be used to naturally construct kernels for many graph types,
including labeled, partially labeled, unlabeled, directed, and attributed
graphs. Second, by leveraging existing efficient and informative propagation
schemes, propagation kernels can be considerably faster than state-of-the-art
approaches without sacrificing predictive performance. We will also show that
if the graphs at hand have a regular structure, for instance when modeling
image or video data, one can exploit this regularity to scale the kernel
computation to large databases of graphs with thousands of nodes. We support
our contributions by exhaustive experiments on a number of real-world graphs
from a variety of application domains
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