GraXML - Modular Geometric Modeler

Many entities managed by HEP Software Frameworks represent spatial (3-dimensional) real objects. Effective definition, manipulation and visualization of such objects is an indispensable functionality. GraXML is a modular Geometric Modeling toolkit capable of processing geometric data of various kinds (detector geometry, event geometry) from different sources and delivering them in ways suitable for further use. Geometric data are first modeled in one of the Generic Models. Those Models are then used to populate powerful Geometric Model based on the Java3D technology. While Java3D has been originally created just to provide visualization of 3D objects, its light weight and high functionality allow an effective reuse as a general geometric component. This is possible also thanks to a large overlap between graphical and general geometric functionality and modular design of Java3D itself. Its graphical functionalities also allow a natural visualization of all manipulated elements. All these techniques have been developed primarily (or only) for the Java environment. It is, however, possible to interface them transparently to Frameworks built in other languages, like for example C++. The GraXML toolkit has been tested with data from several sources, as for example ATLAS and ALICE detector description and ATLAS event data. Prototypes for other sources, like Geometry Description Markup Language (GDML) exist too and interface to any other source is easy to add.Comment: Talk from the 2003 Computing in High Energy and Nuclear Physics (CHEP03), La Jolla, Ca, USA, March 2003. PSN THJT00

A domain-specific analysis system for examining nuclear reactor simulation data for light-water and sodium-cooled fast reactors

Building a new generation of fission reactors in the United States presents many technical and regulatory challenges. One important challenge is the need to share and present results from new high-fidelity, high-performance simulations in an easily usable way. Since modern multiscale, multi-physics simulations can generate petabytes of data, they will require the development of new techniques and methods to reduce the data to familiar quantities of interest (e.g., pin powers, temperatures) with a more reasonable resolution and size. Furthermore, some of the results from these simulations may be new quantities for which visualization and analysis techniques are not immediately available in the community and need to be developed. This paper describes a new system for managing high-performance simulation results in a domain-specific way that naturally exposes quantities of interest for light water and sodium-cooled fast reactors. It describes requirements to build such a system and the technical challenges faced in its development at all levels (simulation, user interface, etc.). An example comparing results from two different simulation suites for a single assembly in a light-water reactor is presented, along with a detailed discussion of the system's requirements and design.Comment: Article on NiCE's Reactor Analyzer. 23 pages. Keywords: modeling, simulation, analysis, visualization, input-outpu

Mechanical and Systems Biology of Cancer

Mechanics and biochemical signaling are both often deregulated in cancer, leading to cancer cell phenotypes that exhibit increased invasiveness, proliferation, and survival. The dynamics and interactions of cytoskeletal components control basic mechanical properties, such as cell tension, stiffness, and engagement with the extracellular environment, which can lead to extracellular matrix remodeling. Intracellular mechanics can alter signaling and transcription factors, impacting cell decision making. Additionally, signaling from soluble and mechanical factors in the extracellular environment, such as substrate stiffness and ligand density, can modulate cytoskeletal dynamics. Computational models closely integrated with experimental support, incorporating cancer-specific parameters, can provide quantitative assessments and serve as predictive tools toward dissecting the feedback between signaling and mechanics and across multiple scales and domains in tumor progression.Comment: 18 pages, 3 figure

Generation of Warm Dense Plasma on Solar Panel Infrastructure in Exo-Atmospheric Conditions

The use of a weaponized thermo-nuclear device in exo-atmospheric conditions would be of great impact on the material integrity of orbiting satellite infrastructure. Particular damage would occur to the multi-layered, solar cell components of such satellites. The rapid absorption of X-ray radiation originating from a nuclear blast into these layers occurs over a picosecond time scale and leads to the generation of Warm Dense Plasma (WDP). While incredibly difficult and costly to replicate in a laboratory setting, a collection of computational techniques and software libraries may be utilized to simulate the intricate atomic and subatomic physics characteristics of such an event. Use of the Monte Carlo sampling method within the Geant4 software library allows for the energy deposition and power density profiles by X-rays into this system to be determined. By understanding and modeling the different factors which can affect the absorption of thermonuclear X-ray radiation, specifically, “cold –X-ray radiation,” in the energy range of approximately 1 to 1.5 keV, the molecular dynamics modeling of WDP generation and evolution can be performed using the LAMMPS code library. One aspect modeled and utilized within this software is the Planck blackbody spectrum of X-rays, assumed to be emitted by the detonation. Another such factor explored is the effect of primary and secondary particle backscattering within the active solar cell layer. Ultimately, it was determined that the primary and secondary particle backscattering of photons and electrons occurs at such a relatively low rate that its effect on the properties of the generated WDP is negligible. Once the energy deposition and power density profiles are determined, LAMMPS is utilized in order to understand the spatio-temporal evolution of the WDP as well as the temperature, stress, and mass density distribution within the material, at its surface, and its immediate vacuum surroundings

The radiation environment near the lunar surface: CRaTER observations and Geant4 simulations

[1] At the start of the Lunar Reconnaissance Orbiter mission in 2009, its Cosmic Ray Telescope for the Effects of Radiation instrument measured the radiation environment near the Moon during the recent deep solar minimum, when galactic cosmic rays (GCRs) were at the highest level observed during the space age. We present observations that show the combined effects of GCR primaries, secondary particles (“albedo”) created by the interaction of GCRs with the lunar surface, and the interactions of these particles in the shielding material overlying the silicon solid-state detectors of the Cosmic Ray Telescope for the Effects of Radiation. We use Geant4 to model the energy and angular distribution of the albedo particles, and to model the response of the sensor to the various particle species reaching the 50 kilometer altitude of the Lunar Reconnaissance Orbiter. Using simulations to gain insight into the observations, we are able to present preliminary energy-deposit spectra for evaluation of the radiation environment\u27s effects on other sensitive materials, whether biological or electronic, that would be exposed to a similar near-lunar environment

Conceptual design study for heat exhaust management in the ARC fusion pilot plant

The ARC pilot plant conceptual design study has been extended beyond its initial scope [B. N. Sorbom et al., FED 100 (2015) 378] to explore options for managing ~525 MW of fusion power generated in a compact, high field (B_0 = 9.2 T) tokamak that is approximately the size of JET (R_0 = 3.3 m). Taking advantage of ARC's novel design - demountable high temperature superconductor toroidal field (TF) magnets, poloidal magnetic field coils located inside the TF, and vacuum vessel (VV) immersed in molten salt FLiBe blanket - this follow-on study has identified innovative and potentially robust power exhaust management solutions.Comment: Accepted by Fusion Engineering and Desig